Detail information of AT3G14720_circ_g.8


General Information
CircRNA Name AT3G14720_circ_g.8
ID in PlantcircBase ath_circ_021808
Alias At_ciR662
Organism Arabidpsis thaliana
Position chr3: 4947383-4947901  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ
Parent gene AT3G14720
Parent gene annotation Mitogen-activated protein kinase 19
Parent gene strand +
Alternative splicing AT3G14720_circ_g.2 AT3G14720_circ_g.3 AT3G14720_circ_g.4 AT3G14720_circ_g.5 AT3G14720_circ_g.6 AT3G14720_circ_g.7 AT3G14720_circ_g.9 AT3G14720_circ_g.10 AT3G14720_circ_g.11
Support reads 17/3
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G14720.1:2
AT3G14720.3:2
AT3G14720.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACATTAGAGAACTAATATACAGGGAGATACTGGAATACCATCCACAGCTGCTCAAGGATTA
TATGAACTCTGAAGGCTCAAGTTTTCTATATCCTAGgtgcgaaatgaaaaggctagaaaatatt
tgaacgaaatgaggaagaaaaatcttgtccccttttcgcaaaagtttcctaacgcagatccttt
agcattgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCGAAATGAAAAGGCTAGAAAATATTTGAACGAAATGAGGAAGAAAAATCTTGTCCCCTTTT
CGCAAAAGTTTCCTAACGCAGATCCTTTAGCATTGCGTCTTCTGCAAAGACTGTTGGCTTTTGA
TCCAAAGGATAGGCCGACTGCTGCAGAGGTGTGTGTTCTGTCATTATATTGTCAGTTGTTACTA
GTAGATTCTTTTTCTTTCGTCCCTATTAGAACAACTGACTTGCTTCTAGTGCAGTAAGCTCTAG
TTCATATTTCAGCTCCTTACATGGTGATGTTAACACTGTGATGTTCTTTGACAGGCGCTGGCTG
ATCCTTATTTTAAGTGCCTTGCTAAGGTTGAAAGAGAACCCTCTTGTCAGCCGATTTCGAAGAT
GGAATTTGAGTTTGAAAGAAGAAGGTTGACAAAGGATGACATTAGAGAACTAATATACAGGGAG
ATACTGGAATACCATCCACAGCTGCTCAAGGATTATATGAACTCTGAAGGCTCAAGTTTTCTAT
ATCCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.416647406
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017