Detail information of AT2G03730_circ_g.2


General Information
CircRNA Name AT2G03730_circ_g.2
ID in PlantcircBase ath_circ_012704
Alias AT2G03730_C1, AT2G03730_C1
Organism Arabidpsis thaliana
Position chr2: 1138443-1139069  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI2
Parent gene AT2G03730
Parent gene annotation ACT domain-containing protein ACR5
Parent gene strand -
Alternative splicing AT2G03730_circ_g.1 AT2G03730_circ_g.3 AT2G03730_circ_g.4 AT2G03730_circ_g.5 AT2G03730_circ_g.6 AT2G03730_circ_g.7 AT2G03730_circ_g.8 AT2G03730_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03730.1:1
AT2G03730.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCTGTTAGCTCAACCACAGTGTAGTCGACAGATTGTTTAACCCCAATGGTTGATCTCATTGA
TGGACTGAAGCAAGAAGACTCATCAGGACCAAGAGActgataagcttgggggccttcagcgtca
atgctagcatgtgaaacgacataattcatatctgtcagagtgaagacggtatcgaaaagaagct
tcggtctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 627
Transcript exons: 1138443-1139069
CTGATAAGCTTGGGGGCCTTCAGCGTCAATGCTAGCATGTGAAACGACATAATTCATATCTGTC
AGAGTGAAGACGGTATCGAAAAGAAGCTTCGGTCTGTCTTTACACTTGATCATCACAATGGAGT
AATCCAAATCATGCAAATTGGAGACATCCACATCTGGAATTACTCTCCCACATTTATCCTCGTC
ATCGACATTGTTCTCCCATTCATCATAATCTCTATCTGCAAACATCAATTGATGAAGCTTACGG
TCCGTGTGAGTCTCATTAAGAGCAGAAGAAACAGTGGTTTTCGGTTCACGGAATCTTCTGCCAC
TGCTTCCACCTGTAAGCACATAACCAAGAAGTTTCCTGATTTTGGACAACCTCTCTGGATCAGT
GATTGCAGAGCACGTTTCTTCATCGGTCACTTGCAAAACCGCTGCTGCTTTTGCTCTATGTGTC
CAAATTTCAGCGTTTACCACATTGCATTGGAGGTCCATAAGAACAGCACATAACTCAGACAACA
AACCGGGTCTATCAGTTCCTGTTAGCTCAACCACAGTGTAGTCGACAGATTGTTTAACCCCAAT
GGTTGATCTCATTGATGGACTGAAGCAAGAAGACTCATCAGGACCAAGAGA

Genomic sequence CTGATAAGCTTGGGGGCCTTCAGCGTCAATGCTAGCATGTGAAACGACATAATTCATATCTGTC
AGAGTGAAGACGGTATCGAAAAGAAGCTTCGGTCTGTCTTTACACTTGATCATCACAATGGAGT
AATCCAAATCATGCAAATTGGAGACATCCACATCTGGAATTACTCTCCCACATTTATCCTCGTC
ATCGACATTGTTCTCCCATTCATCATAATCTCTATCTGCAAACATCAATTGATGAAGCTTACGG
TCCGTGTGAGTCTCATTAAGAGCAGAAGAAACAGTGGTTTTCGGTTCACGGAATCTTCTGCCAC
TGCTTCCACCTGTAAGCACATAACCAAGAAGTTTCCTGATTTTGGACAACCTCTCTGGATCAGT
GATTGCAGAGCACGTTTCTTCATCGGTCACTTGCAAAACCGCTGCTGCTTTTGCTCTATGTGTC
CAAATTTCAGCGTTTACCACATTGCATTGGAGGTCCATAAGAACAGCACATAACTCAGACAACA
AACCGGGTCTATCAGTTCCTGTTAGCTCAACCACAGTGTAGTCGACAGATTGTTTAACCCCAAT
GGTTGATCTCATTGATGGACTGAAGCAAGAAGACTCATCAGGACCAAGAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.474448361
Functional Information
Coding potential Y
Potential coding position 1139032-1138445(-)
1138494-1139029(-)
Potential amino acid sequence MRSTIGVKQSVDYTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEET
CSAITDPERLSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWE
NNVDDEDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGP
QAYQSLGPDESSCFSPSMRSTIGVKQSVDYTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIW
THRAKAAAVLQVTDEETCSAITDPERLSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTD
RKLHQLMFADRDYDEWENNVDDEDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTL
TDMNYVVSHASIDAEGPQAYQSLGPDESSCFSPSMRSTIGVKQSVDYTVVELTGTDRPGLLSEL
CAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLSKIRKLLGYVLTGGSSGRRF
REPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDDEDKCGRVIPDVDVSNLHDLDYSIVM
IKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQSLGPDESSCFSPSMRSTIGVKQSVDY
TVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLSKI
RKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDDEDKCGRVI
PDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQ
MSFHMLALTLKAPKLISLLVLMSLLASVHQ*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Zhang et al., 2019