Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G03730_circ_g.2 |
ID in PlantcircBase | ath_circ_012704 |
Alias | AT2G03730_C1, AT2G03730_C1 |
Organism | Arabidpsis thaliana |
Position | chr2: 1138443-1139069 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | AT2G03730 |
Parent gene annotation |
ACT domain-containing protein ACR5 |
Parent gene strand | - |
Alternative splicing | AT2G03730_circ_g.1 AT2G03730_circ_g.3 AT2G03730_circ_g.4 AT2G03730_circ_g.5 AT2G03730_circ_g.6 AT2G03730_circ_g.7 AT2G03730_circ_g.8 AT2G03730_circ_g.9 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G03730.1:1 AT2G03730.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.474448361 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1139032-1138445(-) 1138494-1139029(-) |
Potential amino acid sequence |
MRSTIGVKQSVDYTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEET CSAITDPERLSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWE NNVDDEDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGP QAYQSLGPDESSCFSPSMRSTIGVKQSVDYTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIW THRAKAAAVLQVTDEETCSAITDPERLSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTD RKLHQLMFADRDYDEWENNVDDEDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTL TDMNYVVSHASIDAEGPQAYQSLGPDESSCFSPSMRSTIGVKQSVDYTVVELTGTDRPGLLSEL CAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLSKIRKLLGYVLTGGSSGRRF REPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDDEDKCGRVIPDVDVSNLHDLDYSIVM IKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQSLGPDESSCFSPSMRSTIGVKQSVDY TVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLSKI RKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDDEDKCGRVI PDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQ MSFHMLALTLKAPKLISLLVLMSLLASVHQ* |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Zhang et al., 2019 |