Detail information of Os10g0567300_circ_g.2


General Information
CircRNA Name Os10g0567300_circ_g.2
ID in PlantcircBase osa_circ_008055
Alias Os_ciR6908
Organism Oryza sativa
Position chr10: 22481457-22482081  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0567300
Parent gene annotation SH2 motif domain containing protein. (Os10t0567300-01)
Parent gene strand +
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0567300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACCCGAAGCTGGCCACATCCAGATGCCGGTAGCCTGGTTGTTACCTATGTTGGCTCCGATAA
CTCAATTCATCATAGACTTTTGTCTCTTGATGTCAGaaaccaaatattaatatcaaagcaactg
ctccaagagggtgctgacatttggagtataatctcaaagaacaatgaacgtgctctttggtcat
ctgcagtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 131
Transcript exons: 22481457-22481491,22481986-22482081
AAACCAAATATTAATATCAAAGCAACTGCTCCAAGCCGAAGCTGGCCACATCCAGATGCCGGTA
GCCTGGTTGTTACCTATGTTGGCTCCGATAACTCAATTCATCATAGACTTTTGTCTCTTGATGT
CAG

Transcript length: 510
Transcript exons: 22481457-22481619,22481735-22482081
AAACCAAATATTAATATCAAAGCAACTGCTCCAAGAGGGTGCTGACATTTGGAGTATAATCTCA
AAGAACAATGAACGTGCTCTTTGGTCATCTGCAGTTCCTGAAATGAAAGCAAAATTTTTGGAAA
TAGTCCATCCTTCCAACAGGGGTTTGTCGGAGCAGGATTTTGAGGTTTTAAGAGGAATTGCTGG
TTGTGGTGATGACATTGGAAGAGACGAGTTTGATAAGCTATGGTCCTGGTTATACCCAGTTGCC
ATTGCTTTGTCAAAAGACAAAATAAACAGGCTATGGGATTTCACAGCACATAGATGGATAGAGG
GATTGATTACATTACAGGAAACTGAGAATGCGCTAAGAAGTTCCAGGGACCGGCTTATGAAGCC
AGGAACATTTGTCCTTAGATTTCCTACTACCCGAAGCTGGCCACATCCAGATGCCGGTAGCCTG
GTTGTTACCTATGTTGGCTCCGATAACTCAATTCATCATAGACTTTTGTCTCTTGATGTCAG

Genomic sequence AAACCAAATATTAATATCAAAGCAACTGCTCCAAGAGGGTGCTGACATTTGGAGTATAATCTCA
AAGAACAATGAACGTGCTCTTTGGTCATCTGCAGTTCCTGAAATGAAAGCAAAATTTTTGGAAA
TAGTCCATCCTTCCAACAGGGGTTTGTCGGAGCAGGTAAAACTGTTTTACTTGAACATAAGAGT
GTTAAATCTTACCTAAAGCTCTAAGGTGCACTTTTGAAAATAGCACAAATCAAGATATTTAATT
TCATGCAATATATTTTTTTCAGGATTTTGAGGTTTTAAGAGGAATTGCTGGTTGTGGTGATGAC
ATTGGAAGAGACGAGTTTGATAAGCTATGGTCCTGGTTATACCCAGTTGCCATTGCTTTGTCAA
AAGACAAAATAAACAGGCTATGGGATTTCACAGCACATAGATGGATAGAGGGATTGATTACATT
ACAGGAAACTGAGAATGCGCTAAGAAGTTCCAGGGACCGGCTTATGAAGCCAGGAACATTTGTC
CTTAGATTTCCTACTACCCGAAGCTGGCCACATCCAGATGCCGGTAGCCTGGTTGTTACCTATG
TTGGCTCCGATAACTCAATTCATCATAGACTTTTGTCTCTTGATGTCAG
Conservation Information
Conserved circRNAs osi_circ_008721
PMCS 0.554246185
Functional Information
Coding potential Y
Potential coding position 22481564-22482078(+)
22482007-22481467(+)
22481831-22482057(-)
22481550-22482080(-)
Potential amino acid sequence MKAKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDIGRDEFDKLWSWLYPVAIALSKDKINRLWDF
TAHRWIEGLITLQETENALRSSRDRLMKPGTFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHR
LLSLDVRNQILISKQLLQEGADIWSIISKNNERALWSSAVPEMKAKFLEIVHPSNRGLSEQDFE
VLRGIAGCGDDIGRDEFDKLWSWLYPVAIALSKDKINRLWDFTAHRWIEGLITLQETENALRSS
RDRLMKPGTFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHRLLSLDVRNQILISKQLLQEGAD
IWSIISKNNERALWSSAVPEMKAKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDIGRDEFDKLWS
WLYPVAIALSKDKINRLWDFTAHRWIEGLITLQETENALRSSRDRLMKPGTFVLRFPTTRSWPH
PDAGSLVVTYVGSDNSIHHRLLSLDVRNQILISKQLLQEGADIWSIISKNNERALWSSAVPEMK
AKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDIGRDEFDKLWSWLYPVAIALSKDKINRLWDFTA
HRWIEGLITLQETENALRSSRDRLMKPGTFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHRLL
SLDV(+)
MPVAWLLPMLAPITQFIIDFCLLMSETKY*(+)
MATGYNQDHSLSNSSLPMSSPQPAIPLKTSKSCSDKPLLEGWTISKNFAFISGTADDQRARSLF
FEIILQMSAPSWSSCFDINIWFLTSRDKSL*(-)
MTKEHVHCSLRLYSKCQHPLGAVALILIFGF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017