Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0567300_circ_g.2 |
ID in PlantcircBase | osa_circ_008055 |
Alias | Os_ciR6908 |
Organism | Oryza sativa |
Position | chr10: 22481457-22482081 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os10g0567300 |
Parent gene annotation |
SH2 motif domain containing protein. (Os10t0567300-01) |
Parent gene strand | + |
Alternative splicing | Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11 |
Support reads | 2/2 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0567300-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008721 |
PMCS | 0.554246185 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
22481564-22482078(+) 22482007-22481467(+) 22481831-22482057(-) 22481550-22482080(-) |
Potential amino acid sequence |
MKAKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDIGRDEFDKLWSWLYPVAIALSKDKINRLWDF TAHRWIEGLITLQETENALRSSRDRLMKPGTFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHR LLSLDVRNQILISKQLLQEGADIWSIISKNNERALWSSAVPEMKAKFLEIVHPSNRGLSEQDFE VLRGIAGCGDDIGRDEFDKLWSWLYPVAIALSKDKINRLWDFTAHRWIEGLITLQETENALRSS RDRLMKPGTFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHRLLSLDVRNQILISKQLLQEGAD IWSIISKNNERALWSSAVPEMKAKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDIGRDEFDKLWS WLYPVAIALSKDKINRLWDFTAHRWIEGLITLQETENALRSSRDRLMKPGTFVLRFPTTRSWPH PDAGSLVVTYVGSDNSIHHRLLSLDVRNQILISKQLLQEGADIWSIISKNNERALWSSAVPEMK AKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDIGRDEFDKLWSWLYPVAIALSKDKINRLWDFTA HRWIEGLITLQETENALRSSRDRLMKPGTFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHRLL SLDV(+) MPVAWLLPMLAPITQFIIDFCLLMSETKY*(+) MATGYNQDHSLSNSSLPMSSPQPAIPLKTSKSCSDKPLLEGWTISKNFAFISGTADDQRARSLF FEIILQMSAPSWSSCFDINIWFLTSRDKSL*(-) MTKEHVHCSLRLYSKCQHPLGAVALILIFGF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |