Detail information of Os03g0750800_circ_g.4


General Information
CircRNA Name Os03g0750800_circ_g.4
ID in PlantcircBase osa_circ_021927
Alias NA
Organism Oryza sativa
Position chr3: 30938049-30942073  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0750800
Parent gene annotation Similar to Transcriptional adaptor (Fragment). (Os03t0750800-01)
;Similar to cDNA clone:J023128E10, full insert sequence. (Os03t0
750800-02);Similar to cDNA clone:J023128E10, full insert sequenc
e. (Os03t0750800-03)
Parent gene strand -
Alternative splicing Os03g0750800_circ_g.1 Os03g0750800_circ_g.2 Os03g0750800_circ_g.3 Os03g0750800_circ_g.5 Os03g0750800_circ_g.6 Os03g0750800_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0750800-01:7
Os03t0750800-03:6
Os03t0750800-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGTAAATAAAGCAAATGAAAGAAAAATGTACCTCTAGAAGAAGGATTTCCTCGTCTGCATT
CCAATCTGGACAAATAAGAGGGAAAGACAGGTTGTCcttgacaagtaaatacgcaataccctta
gcttcagttcacgatcagtttccgaatcagtttctttaaactccatctcagcgagtgcctgttc
agcatcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGACAAGTAAATACGCAATACCCTTAGCTTCAGTTCACGATCAGTTTCCGAATCAGTTTCTT
TAAACTCCATCTCAGCGAGTGCCTGTTCAGCATCGTTATCATACTCTGGGTCAAATTCATGTCT
CTTTGAATTGTATCCACTCAGTTCAGTCAAAGAAGGCCCTTCATCTGCAGAATATCGGGGTTTT
TTCACACCTATACTTCTATCCACATGACCATCTGCGACATGCAAGTTAAACAAGGCAATATTAA
AGTAAACAGATGTACATAAACATGAAAAGTTCAGGATGCGTGGTGTATACTTCGATACGGTAAA
GAAAATGAGTTTCCCACAAACACAGTAAAGAAAATGAGTTTCCCACAAACACTTCACACCCCAC
ATAAATAAATAAAAAAGTAACTTTAGTTCATTTTGCTGCCAGTATAAAATTCTGGCAAACATAA
TTTTGGTGCTGTTATTTTTTGTAGTTCCATTCCTAAGAATGTGACAAGCATGATTAGACATATC
CTAAAGGTTGAAATTTGAGAGCTTCGGAGTCCATGCCAAGAATTGTTCCGTTTAAGTTTGATCT
GGTCACCCATGACTGGTTATAACGAATTAACGATAAATGTAAGTAATGTTTTATAGACACCAGT
GCAACGCTGAATGATATGTGTAGAATGCAAAATAAGACTGTTGTGTTCAGTTAGGATTATACCT
TCAACTTTTGCTACATTAGCACCATCTTTGAATTGTCCAACATTTGATGCTTTCTTATTTGCAC
CTGGACAGATTCAACAGCATCAGCATAATGTGATAGCGCATTTCCATAAAATATACAAATATAA
AGATATATTGTTTCAGAATTTAATTGTTCAAGGTTGTCATGTCAATGAGACGTACCCCCAGCTA
TGTGTGAAGGTGATCGACCAGCTAAACCTTCTCCAAGTGCATCTTCCACCCTATGCAAGTTAAA
AAGTTGGTAAACAACCTATTGCAAATTTCAGAGTAATGCCAGCAAGTGTAAAGCAAGAACAGCA
TACTTGACCCTTGGGGGAGAAAATGGAGACTCGTCCTTAGGGGTCAAATCCCCTGGTAACACTG
AAGTTCCTATACAAATAATAAAAGGTCATGTATAAATACTAGCCAATATAGTGAAATATTATCT
CCTTTTCTGCTTTTCATATTTGAATTATTACACAAGGCAGCAATTACCAATTAGAAATCCATAT
TCAGAGGGGGGTTGTAACAGCCCTCCCTCCAGAACCGCGTAGCCAGCCCAACCGACGGGCGGGC
CCACTTACACATACCACCCCACTTACACTTCCGTCCTCGCTTTGTGTAAAAGGGTTAACCCGGG
AGTCGTATGGTTGGAGGGATGAGGCCTTATAAGTTGGTTCCACCCTTGCTAGACTAGCAAGGTG
GTACTAAACATGCGCACACAGTTCACATGGGCCACACAGGCCTCATCCTAATTGGGCCAGGATG
TCACAGGGGTGCCCTTGCTAAGATTGGAACACTATGATGACACAAGCAGGGACTAATCCAAGTG
TGGCAATCTTTGCAGTGACAAATGATGGATTCCCCCTACAGTTTGGAGTCATCATACAGTGCAA
GGTTCTGTTATTTGATTATGGGAAAAGTCCATTTTACACCCTCGAACTCTTATGTTTGTCTAAA
ATACACCTCGAACTACAAAACCGGCCATAATACACCCTCCAACTAGTAAAACCGTACATTTTAC
ATCATATAGCGGTTTTAGACTGGTTTTGGACGATTTTGGACGCCACGTCAACATAGGGTCCCAC
CAGTCCTCTTCTTCTTCCTCCTCTCTTTGGATGAGCTCCCTAAGGAGCGGAAGCAGCGATGAGC
TCCCTCCCTCCATCCCCGGCATCCTCCCTCTAGCCATGGCCGACGAGCTCCCTCCTCATGTGCA
CGCATGCTAGGGAGATGCTACGGCAAGCGCTGGCACCTCGTCGAGCTCGAGTTCCTCATCCCCA
AGCCTCGTCGCCTTTGATGAACTCGGCGTCCCCAAGTAGCTCGAGGTCCACCAGCAAGCTGGTG
TGACGCGTCGGCTCTGAAGAGGAGTCGCTCGGGAAGGGGGAGCTTGAGCTCGAGCTCGCTGGTA
CGATTTCATGGAGAAGATCGAGCTCTAGAGGCAGCAGAGGAGGCGGATCTTGAGCTTGTGCTCG
TTGGCGGTCGGTGTAGGAGGGGCGGATGAGGGGGCGACGATGAGGAAGGGGGTATGGAGCTTAC
CGGCTCTTGAAAGGGTGAAAGGGAGCTCGACCTCGCCGGTTCTCGCAAGGGTGACGGGGAGGGG
GAGATCGAGCTCACCGCTGATGCCGATCTTACAGGGAAGCTCAAGCTCTGGCTCCCGGAGCGCC
TCCTCCATCCGTCAGCTAGTTCAACCTCCCTCCTTCCCTCTGCCGCCTCCCCAAGCGCCTTCTC
ATCCATGCGCCGCAAGCGCAAGCTCGAGCTCCGGTGATGTCGAGGTTGAGCTCTGCCTCGTCGT
CGCCTGCTCCATGCGTGCCCAGATCTGTCTCGGGGCAGCGCCGTGTGCTGGCGACCAGCGGAGG
ACGGAGGTGGAAGGACGCGGAGCTCGGCCTCGGCACTATCGGCATCCAGCACCGTCAGCACTAT
CTCATGGCCCTCGCTCTAGCTCACTGCCTCACTCCGCCGCTCATCGTGGTAATCCCGTATGGAC
AGAGAGAGCAAGAGCACTGATCGATTTTTTATTTGTTTTCTTGGGTTGATTGGACTGCCACATC
AGATGAAATCCACTTAAGTTTGCATGAGGGGTTCCTTTGCATGGTTTTAAAAGTTAGAGGGGGT
TATGTACCCGGTTTTCAAGTTAGTGGGTGTGTTTTAGACTACATGAAAAGTTGAGGGGGGTAAA
ATGGACTTATCCCTTTGATTATTAACCTGTACATCTATACCTAGTCTTTGTTTCTTTGTATACA
GTACTACAGTTACACGCTGTGGTACGCTGTGGTGGCAGCCCAGCTGCTTCTGATGGGAATAGCA
ATAAATCAGTGAAGGAAGTATGTCATGCAGGTGGATAGGCCAAAAGCATGTAGGGTAGGATCTA
TGTGTCTGTTGGATCCACAGATATCAGATCCGAGCTTTTGTTTGGATGTGAGATCTTACATCCA
AACAAAAGCCCAAATGGATCTTACATCCAATTGAAAGTATTGTGCTGCTGCCAATTCACCAGGT
AAAGAACATGACATAGATCACTCACTAACTAGCACCCTACATTCACTAACTAGCACCCTATATT
TTATGTTTTAATATTGCCCTTCATATTTTGGATATTAAATGTTGAAAAATCAGGGTACCGAACA
TACTGATATATCCATGAGGACCATAGGTGCGCAATCAAATACTAAACAAAAGGCTAAACCACTG
AACCACATTATGTATGGCGATTAGCAAGTAGTATGTTAGCATGTTAAGAAAACTAAACCACACA
ACACCATGTGTTTTTTGTTATCCCATCAGTGTGAAATCTTCAAATGTTAAACAAAAAGTAGAAT
ATTTGACAACTTGCAGGTTAAAAGACTGTTTACATTAACTGAAAAGTATGATAGCAACTCACCT
TTTTTACTCTCGCCTTGTACTTTAGCCATAGCAAGCAATTCCTTCCTGTTCTTACCGTTAACAT
GAGACATATCCTACAATGATGAGATCACGAGACAGTATATTGAATTAAGGAGTACCAGACGACT
ACCAGTTGAACTAAACAAATTAACAGTTTGAGAAAATAATTACCGGAAGGGGATAACAAGGTGA
GTTCATGTATGCAGTTGTATAATGATCAATGCATTGTGCCTTGGTCTTGGTGCCAACATGCTCC
GCAACTTCAGCCCAATTTCCCAGACCATACATTTCAATTCCCTTTTATTAATTATAACAAGTAA
ACAGTCAAAACCCAACAGCCAGAAAGTAAATAAAGCAAATGAAAGAAAAATGTACCTCTAGAAG
AAGGATTTCCTCGTCTGCATTCCAATCTGGACAAATAAGAGGGAAAGACAGGTTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.104680824
Functional Information
Coding potential Y
Potential coding position 30941854-30938112(+)
30941922-30942012(-)
Potential amino acid sequence MHCALVLVPTCSATSAQFPRPYISIPSRRRISSSAFQSGQIRGKDRLSLTSKYAIPLASVHDQF
PNQFL*(+)
MYGLGNWAEVAEHVGTKTKAQCIDHYTTAYMNSPCYPLPDMSHVNGKNRKELLAMAKVQGESKK
VLPGDLTPKDESPFSPPRVKVEDALGEGLAGRSPSHIAGGANKKASNVGQFKDGANVAKVEDGH
VDRSIGVKKPRYSADEGPSLTELSGYNSKRHEFDPEYDNDAEQALAEMEFKETDSETDRELKLR
VLRIYLSRTTCLSLLFVQIGMQTRKSFF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017