Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025128_circ_g.4 |
ID in PlantcircBase | zma_circ_003196 |
Alias | circ1508 |
Organism | Zea mays |
Position | chr10: 105645702-105646366 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d025128 |
Parent gene annotation |
methyl binding domain113 |
Parent gene strand | - |
Alternative splicing | Zm00001d025128_circ_g.2 Zm00001d025128_circ_g.3 Zm00001d025128_circ_g.5 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d025128_T008:3 Zm00001d025128_T011:3 Zm00001d025128_T013:3 Zm00001d025128_T015:3 Zm00001d025128_T017:3 Zm00001d025128_T003:3 Zm00001d025128_T007:3 Zm00001d025128_T001:3 Zm00001d025128_T004:3 Zm00001d025128_T012:3 Zm00001d025128_T006:3 Zm00001d025128_T016:3 Zm00001d025128_T010:3 Zm00001d025128_T002:3 Zm00001d025128_T009:3 Zm00001d025128_T014:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.104262281 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |