Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0118100_circ_g.1 |
| ID in PlantcircBase | osa_circ_000141 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 1025330-1027333 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os01g0118100 |
| Parent gene annotation |
Similar to Fructose-bisphosphate aldolase. (Os01t0118100-01) |
| Parent gene strand | + |
| Alternative splicing | Os01g0118100_circ_g.2 Os01g0118100_circ_g.3 Os01g0118100_circ_g.4 Os01g0118100_circ_g.5 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os01t0118100-01:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_001769* |
| PMCS | 0.185977474 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
1025445-1027330(+) |
| Potential amino acid sequence |
MQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKERAG AVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQKLIFDRPEPGVRKIVLATN LAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHLYP QCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAF DRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDGFTYP VRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDYSA RTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPSKV LLLACHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNT PCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLR LGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAI FNCLDPILTIVSGLSVRDPFLTPFDKKDGFTYPVRSRFLEDILEITGHRLTPYNQIDDYGQEKS WKMQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKER AGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQKLIFDRPEPGVRKIVLA TNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHL YPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIG AFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDGFT YPVRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDY SARTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPS KVLLLACHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALN NTPCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKS LRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFG AIFNCLDPILTIVSGLSVRDPFLTPFDKKD(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |