Detail information of Os01g0118100_circ_g.1


General Information
CircRNA Name Os01g0118100_circ_g.1
ID in PlantcircBase osa_circ_000141
Alias NA
Organism Oryza sativa
Position chr1: 1025330-1027333  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0118100
Parent gene annotation Similar to Fructose-bisphosphate aldolase. (Os01t0118100-01)
Parent gene strand +
Alternative splicing Os01g0118100_circ_g.2 Os01g0118100_circ_g.3 Os01g0118100_circ_g.4 Os01g0118100_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0118100-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTG
AGAGATCCATTCTTGACTCCATTTGACAAGAAGGATggtttcacttatcctgttcggagtcgat
ttctagaagatattctcgaaattactgggcacagattaactccttacaatcaaattgatgacta
tggtcaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1059
Transcript exons: 1025330-1025497,1025578-1025850,1026357-1026551,1026722-
1026925,1027012-1027081,1027185-1027333
GGTTTCACTTATCCTGTTCGGAGTCGATTTCTAGAAGATATTCTCGAAATTACTGGGCACAGAT
TAACTCCTTACAATCAAATTGATGACTATGGTCAAGAGAAAAGTTGGAAGATGCAAAAGCAAGC
TCTAAGGAAGAGGAAGAGCCAAATTGCTTCGGTTGTAGAAGATACAGTTCAAGCTGCTGATTTA
AGGGACTACAGTGCACGAACTCGTGACTCACTATCCTGTTGGAATCCTGATTCGATTGGTTTTA
ACTTGATAGAAAATGTCTTATGCCATATATGCCAAAAGGAAAGAGCTGGCGCAGTTCTTGTATT
TATGACTGGGTGGGATGACATCAATGCACTGAAAGAGCAGCTGCAAGCAAACCCATTGCTTGGA
GACCCTAGTAAAGTTTTACTGCTTGCATGTCATGGTTCAATGGCTAGCTCAGAGCAGAAACTAA
TATTTGATAGACCTGAGCCTGGTGTAAGGAAAATTGTTCTTGCAACCAATTTGGCTGAAACAAG
TATTACTATCAATGATGTAGTTTTTGTGGTTGATTGTGGCAAAGCAAAAGAGACATCTTATGAT
GCATTGAACAACACTCCATGTTTGCTTCCAACCTGGATCTCCAAGGCTTCTGCCAGACAGAGAC
GAGGAAGAGCTGGTCGAGTCCAACCAGGGGAGTGTTACCATCTATATCCACAATGCGTGTATGA
AGCATTTGCTGACTATCAGTTGCCAGAACTCCTGAGAACTCCTCTGCAATCCCTCTGTTTGCAA
ATAAAAAGCTTGCGCCTTGGGAGCATCTCTGAATTTTTATCCAGAGCTTTGCAATCACCTGAGT
CTCTATCGGTAGAAAATGCCATTGAATATCTCAAAGTCATTGGAGCGTTTGATCGTAATGAAGA
GTTAACAATTCTAGGAAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGCTG
ATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTGA
GAGATCCATTCTTGACTCCATTTGACAAGAAGGAT

Genomic sequence GGTTTCACTTATCCTGTTCGGAGTCGATTTCTAGAAGATATTCTCGAAATTACTGGGCACAGAT
TAACTCCTTACAATCAAATTGATGACTATGGTCAAGAGAAAAGTTGGAAGATGCAAAAGCAAGC
TCTAAGGAAGAGGAAGAGCCAAATTGCTTCGGTTGTAGAAGTATGTAGTTCCTGCATTTTTATG
CCCACTATTTCCTGTTCAGAGCTTTGGTCTCCCCTCTAAACTCATCTTTTGAGCAGGATACAGT
TCAAGCTGCTGATTTAAGGGACTACAGTGCACGAACTCGTGACTCACTATCCTGTTGGAATCCT
GATTCGATTGGTTTTAACTTGATAGAAAATGTCTTATGCCATATATGCCAAAAGGAAAGAGCTG
GCGCAGTTCTTGTATTTATGACTGGGTGGGATGACATCAATGCACTGAAAGAGCAGCTGCAAGC
AAACCCATTGCTTGGAGACCCTAGTAAAGTTTTACTGCTTGCATGTCATGGTTCAATGGCTAGC
TCAGAGCAGGTATTACAACAATGGTGATCTAATTTATATGTTTATTGTTACTTTTAGCACAGCC
ATGCTCAGTTCTCTGTTTTAAGCAATGGAATATTGATTGGCCTACCGTTTTCAATTTGATGTGC
TTAAGCGATAAGGTGTTGTCCAGTAACATGTGGCAGTACTTGTTTGATATAACGATATTTGAAA
CTTGCCTGCAGTCCTTATAACTTGCTTTGCTAATGCCAGTTCTACAATATTGCGTTTGGAATTT
CTATGTCCTAAGTTAATGTATGAATGTCATGTTTTGTAGGCTTATAACTTCTGTTAATGTGTTC
AACATATTATTGAAGCCCATATATTTCGTCATGTTTTACTCCATGATTATCATATCATCCCATG
ATATGGTTCTGTTAGTGCTATTTAACTTATTCAGGTCATTTGCAGCCATATACAGAAAGCACCA
AATGATATCTGTGTCTTCTCTTATACCATTTATCATATATTGATATTACTGCCTCTTTGCTGTG
CAGAAACTAATATTTGATAGACCTGAGCCTGGTGTAAGGAAAATTGTTCTTGCAACCAATTTGG
CTGAAACAAGTATTACTATCAATGATGTAGTTTTTGTGGTTGATTGTGGCAAAGCAAAAGAGAC
ATCTTATGATGCATTGAACAACACTCCATGTTTGCTTCCAACCTGGATCTCCAAGGCTTCTGCC
AGACAGGTGTTTTTCTCTTGTTGGAGTATTACTAATTTTATTTTTTTCGTAACACTTTGAATGA
ATTTGCATTTTCTGGAATCAATATGCTAATAAATATTTTTTTTTAACTTTAACACGCATATCAT
CAACTTCTATCATATCATTTTGGCTAATTAAATTGTATAACAATTTAGAGACGAGGAAGAGCTG
GTCGAGTCCAACCAGGGGAGTGTTACCATCTATATCCACAATGCGTGTATGAAGCATTTGCTGA
CTATCAGTTGCCAGAACTCCTGAGAACTCCTCTGCAATCCCTCTGTTTGCAAATAAAAAGCTTG
CGCCTTGGGAGCATCTCTGAATTTTTATCCAGAGCTTTGCAATCACCTGAGTCTCTATCGGTAC
TTGATTTCCGTATTAATCACAAGCCGCAAAAGTCTATCCTGTGTCTTGGAATGACTTGATAAAT
TAATTTGAATTTTTTCAGGTAGAAAATGCCATTGAATATCTCAAAGTCATTGGAGCGTTTGATC
GTAATGAAGAGTTAACAATTCTAGGTATCAGATCCATCCTTCAAATCATCCGTTTATCACTGCT
TTATTGAATCATCTTGAGCATTTGTAGCATGTGCTAACTATACCCACGGATTGGCATTACCAGG
AAAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGCTGATTTTTGGTGCTATT
TTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTGAGAGATCCATTCTTGA
CTCCATTTGACAAGAAGGAT
Conservation Information
Conserved circRNAs osi_circ_001769*
PMCS 0.185977474
Functional Information
Coding potential Y
Potential coding position 1025445-1027330(+)
Potential amino acid sequence MQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKERAG
AVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQKLIFDRPEPGVRKIVLATN
LAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHLYP
QCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAF
DRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDGFTYP
VRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDYSA
RTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPSKV
LLLACHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNT
PCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLR
LGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAI
FNCLDPILTIVSGLSVRDPFLTPFDKKDGFTYPVRSRFLEDILEITGHRLTPYNQIDDYGQEKS
WKMQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKER
AGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQKLIFDRPEPGVRKIVLA
TNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHL
YPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIG
AFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDGFT
YPVRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDY
SARTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPS
KVLLLACHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALN
NTPCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKS
LRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFG
AIFNCLDPILTIVSGLSVRDPFLTPFDKKD(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017