Detail information of BGIOSGA001558_circ_g.1


General Information
CircRNA Name BGIOSGA001558_circ_g.1
ID in PlantcircBase osi_circ_009536
Alias Chr01:18512760_18517289(MH63RS2), Chr01:18716756_18721286(ZS97RS2), Chr01:18512760_18517289(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 19419525-19424055  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA001558
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001558_circ_igg.1 BGIOSGA001558_circ_g.2 BGIOSGA001558_circ_g.3 BGIOSGA001558_circ_g.4 BGIOSGA001558_circ_g.5 BGIOSGA001558_circ_g.6 BGIOSGA001558_circ_g.7 BGIOSGA001558_circ_g.8 BGIOSGA001558_circ_g.9 BGIOSGA001558_circ_g.10 BGIOSGA001558_circ_g.11 BGIOSGA001558_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001558-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTACAGCATTTTGATAGGCTTTGACTGAATGATGAAGCTTCATGTGATCCCAGGATCCACTCA
CGAAAAAGCTTGTCAGATATGCATTACCCAGATTATctgcttcattccgtagaccatagactga
gagtatgaaataagactgatccaagtcgcatgttaagtaatacctgaaattatcacatttcagt
ataaatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTCATTCCGTAGACCATAGACTGAGAGTATGAAATAAGACTGATCCAAGTCGCATGTTAA
GTAATACCTGAAATTATCACATTTCAGTATAAATACAAAGGTACGCAATAATAGAACCCAATAC
ACCAAGATTGGTGTTTTAGTATGCCATCTTTGATTGAATAGAGATGCATATTGAATCTGATTCA
TCTAAATGATCATACCATGTTTGAGCAGCATACAATAACCCCAGGTAACCAAAACTAGTAGCAA
AAGTTCTAGTTCAATGAGGCTAATAGTTAACACCCATTCTATTCATGTGAAAAAAACAAACCCA
TTCTATTCACGAGTATTATATTTGCATGTTTAACTGACCGCATTGTAAAACCTATTACAATGAT
TACAATCAAGGTTAAATATGCCAGTCATAACCGCTCAGACCCAAAATACTGTGCTTAAATAATG
AAAGAAAATAGAGGCCAATACTTTATTGAATTCAACTAAAATATTTAACAGAATTTAGTTGAGC
AGATCATGACTAGTGCAATCTTACTGCTTATCTTTGGCAAAAGGTCCTGAAGTTAAATAAAGCT
CAAGGTTATTATTTCAGCCAGTAAAACAAATCCAAGATCCTTGCAAAAATGTTGATGTATAGTA
AAGCAATTTTTAAATTCAAGCTTATCATTGCAGTTTAGCATCCACAATTCCCAGTTATAAAACA
GTTCTTATAAGGAAATAAAGGAAAACTGTTTTGGACAATGGGTGGACAATTTGCTGAAATATTT
TCCCTTTTGTGGATAGAGTTAGAAGATGAAGACATGCCAGTTACACTGCTTTCTTAACTACAAC
TAGGTGCTTCAAAGTTAGCACACTTTCTACCAGGTATAGTATCTGTGTGCAAATTTCAACTCAG
TTAATGTAACTAATAATTCTTATAACAAAAAGTTGCTAAATTGCTCTATGCTATTTACAACAAA
AATCATGATGTTCCAAAGAAGAGCACTCAGGAGCATAAAAAAAATGTAAATTTGTAATGGGTCT
CGCATAATTAATATTGATTTCAAGGATTAAGAGAACCTACATTGGAGCAATGTTGTCGTGTCTT
ATCAAAAGAATGACTTTCCCCAACACAGCAACTGTCTTGTTCAAACCCTCTGATAGGATGCCTA
TGGTTGCTTTCTTGTGAGATGATTTTACTACAGATAGAATAAAGGAGAAAACGTATAAAAACCA
ACAGGAGTACAAAAGAAATCTTATACAGGCTTGAATATATGCCAAGTGACAGTGAAAGTATTAC
TGTTGACTTCACTCAAAGAAGACACTGATGATGCTAATCTCTTGGATCGTAATTGTCCCTGTGG
AAGAAATTATTCATAAGTACAAATAAATAAGAAAATAAGTTATTCCAAAACAAATCATTGTCAA
TTCATGACAAATGAAACTTGAAGCCTTTTATGCAGGCAAAAACAACTTGAACTTCAGAATGGTT
TAATGATTATGTGTGGCACCATGCAGGAATTACTGTTCACGCTTGTGAACAGTAAGCGCGGAAC
TCTAGCATCTAGTTGCGTTAGGAGACAATTTGCTTGAGTTAGCAGTTTGATTGGAGATGAGATT
TTTGGGTTGTTTAAGTTATGTGTTAGCATATTCGAGTTAAATCTATCCCTTTCTTATTAAAGAT
ATGTTATTAGACCATAAACGGCTAAATCACTACAAAGAACAAGACACATCTACCATTCACATCA
ACCAAAGTTTCTACCTGAAGTTCATCATTCCAATCTATAATGTTCTCTCTTCTGTTCAACCAAC
GCCGCTTGCTTGTCTTCTCAGAAATATTTTATTTACCCAATGAACTAAAGGTTTATTAGTCGCA
GTCTAGCATATTTCGTAAAAGTAACTCCATAGATCGCTATAGTTATGAAAAAAGATGTATTCTA
TTTTGTGTTATTTTGCTTTGTTTTGCCAAGTTGCATGAATATGGACAACATAAAGTTCTTATAT
TCATGGTTGGTAAGTAGGAAGCCTCTTTGATTTAGAATAAGATAAAATGCGAGTTCAAAAGGTT
AAGATGGAAGAATTTTCATCTGTTCATGTTAAACTCTGGTCTACATGCCATAGTTACATACTCC
CTCCGTCCCATAATAAGCGCAGTTCTATCCGTCTTATTTGAAATATTTTTATGATTAGTATTTT
TATTGTTATTAGATGATAAAATATGAATAGTACTTTATGCGTGACTTAACTTTTCAATTTTTTT
CATAAATTTTTCAAATAAGATGGACAGTCAAACGTTGGGCACGGAAACTTATGGCTGCACTTAT
AATGGGACGGAGGGAGTAGAAGATACCTTCATTGCACTATCTAGCTTATCAAGGAGACTGATGA
TCTTCTGAACTTCTGTATCAGCACCAAGACCAGGATCTTTTAAAGCTGCAGCTTCAAATCCACG
AAGTGCTCTTTCATAGTTCTCTAGGTATTTGTCAGCCTGGAAGGAACCAAAACAAATAACATAT
TACACAAAAGGATGTCCTATACTTGGCGGAAAATTCAGTTGATTTAGCTACCCAGTTTAAGTTA
TGATCCGGGTTACTCACTGTGGCACAATTATAGTAGAGGTCTGGATTACATTTCGTAGTCTCAT
CCTTTTCCTGAGCATAAAATGAATTCAATTATATTCATATAATAAAACAAACAAGGCCACCCAA
CACACAAGCCCACCCAAAATCAGGAGGTGGGGGTGGGGATGGGGGTGGGGGTGAGGGGGGTCAA
CTCTAGCACCCATTACCTAACCGTTCGCTTTGCAGACTCTAATTAGTAACTACTCCCTCCATCC
GAAAATAATAATAGGGAAAATTGATTATAGAGCACCAAAAGTTTCTGTTTTTGGTTTTATAGCA
CCAAAAGGTTCCGGTTCATTTTAGTAGCATTGCAAGTTACCTCCGTTACTGATTTTGGCACTAT
CCAAATTGACGTTATCTCCCCCACCTTGCCCCGTCTATCTTCTTCATCCTCCCCAAAAGGTGAG
TTCCATTCCATGGCACAGCTGTAGAGACGAGCAGGAGGGGCGCAGCACTTCGTCAAGCTCGAGT
GCAGTGCAAGCAGACGAGATCTGGGGTGCCAGTGGACATCATCACAAGCTGCAGGACGCACGTT
CAGCTGTCCAGGTGAGCTCATGTATGGTCGTGCATCCAGTCTAGCTTGTGGACTCGTGGTTCAG
CAACATTGTTCTGCCTGTATGATACCCACCCTGCTATACTTCAGTTTGTGCACATTTTTTATCC
ATGAAATTGGGATTGGCTAACAAGGCAAGAGGATTGATGTTGGAACAGCGTTCATCAGCAAGTT
CCAGTCTTCCAGAGATGAAGTACTAGCTTGTGTATGGCGTGGTGATGGTGCAGGGACGACCGGA
AGACAGGCTCGAGGGTGTTGGCTTTTGGGCCAGCTTTAGTGGCTGATGTCCAAGGCGAGCTTGA
GGCCTCAAGGGAGATCGGGAATGGAACGGGTGGGACGGCCAGCACCTGTGCGAGGCCTGAGATG
GGGAGAAGGATTGAAGAGGAAGATGGTATATTGGTATATTGCAAAAATAATAGAAAGAAAAAGA
AAACTAACAGAAGTTTGGATGGAGTGCTAAAATCAGTAACGGAGGTAAACTTTCAATGCTATTA
AAGTGAACCGGAACCTTTCGATGCTATAAAACCAAAAACAAAAACTTTCGGTGCTCTATAACCA
ATTTTGCCATAATAAAACCTAGGACTAGATGGGGCATTTGCTAGTACTAGATACATTGTACTAG
GAAACGTCACATCCGGTCCTAGATTCTTATATTTTGGGACTGAGGTAAGTATCAAACTGGTACA
TAATGATCATCTAGTGTCAAATCTTAAACATGCCACCTAGACGTTGGTAACGTTAAGTATTAGG
AACCCTTGGAATTGCAATGGGACAACGTGCATACAAGTCACCATACAAATACGCAGAAGAGCCC
ATTAGAATAGGGTAAATACACAACTAGCTATAAGATACATCTAGCAGTTTGCACTTTGCCCAGC
CAAATCACTCTCTTCCCAGAGTACCCCTTCCTTTCTTTCTCTTGCATGACTAGTGGACCACATC
AGGTTTATTTGGCAAACTGATCTTAGCTAACTCAGGTACCATATCTAAATGGACGCCGGGTAAA
CGAAATACGAAAGAATAAATGCATCTTCAGCTTGTCAAAGCGATTTTTGGCATGGAATTGATTG
TCACTGGTTTTAACTGTTGGAAGGTGCAAATTCAACAGTTTGAGTTGAGAAGTGTTTTCTGGAC
TCACACGAAAGTAGAAGGGGAGTAGAATGGACTCCTGAATAAAAAATTGGAAGCTTTACACAAA
AAAGTGGAAATCTTTCAGAGAATATATCTTACTTTCATGAATGAAATTATCAAACCAACAGAAG
TATGAAATGCACAAACTTACAGCATTTTGATAGGCTTTGACTGAATGATGAAGCTTCATGTGAT
CCCAGGATCCACTCACGAAAAAGCTTGTCAGATATGCATTACCCAGATTAT
Conservation Information
Conserved circRNAs osa_circ_001864
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021