Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA001558_circ_g.1 |
| ID in PlantcircBase | osi_circ_009536 |
| Alias | Chr01:18512760_18517289(MH63RS2), Chr01:18716756_18721286(ZS97RS2), Chr01:18512760_18517289(MH63RS2) |
| Organism | Oryza sativa ssp. indica |
| Position | chr1: 19419525-19424055 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | ei-circRNA |
| Identification method | CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2 |
| Parent gene | BGIOSGA001558 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | BGIOSGA001558_circ_igg.1 BGIOSGA001558_circ_g.2 BGIOSGA001558_circ_g.3 BGIOSGA001558_circ_g.4 BGIOSGA001558_circ_g.5 BGIOSGA001558_circ_g.6 BGIOSGA001558_circ_g.7 BGIOSGA001558_circ_g.8 BGIOSGA001558_circ_g.9 BGIOSGA001558_circ_g.10 BGIOSGA001558_circ_g.11 BGIOSGA001558_circ_g.12 |
| Support reads | NA |
| Tissues | root, leaf, panicle |
| Exon boundary | No-Yes |
| Splicing signals | CT-TA |
| Number of exons covered | BGIOSGA001558-TA:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osa_circ_001864 |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhou et al., 2021 |