Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA001558_circ_g.4 |
ID in PlantcircBase | osi_circ_009538 |
Alias | Chr01:18513823_18517289(MH63RS2), Chr01:18717819_18721286(ZS97RS2), Chr01:18513823_18517289(MH63RS2) |
Organism | Oryza sativa ssp. indica |
Position | chr1: 19420588-19424055 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | ei-circRNA |
Identification method | CIRI2, CIRI2, CIRCexplorer2, CIRI2 |
Parent gene | BGIOSGA001558 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA001558_circ_igg.1 BGIOSGA001558_circ_g.1 BGIOSGA001558_circ_g.2 BGIOSGA001558_circ_g.3 BGIOSGA001558_circ_g.5 BGIOSGA001558_circ_g.6 BGIOSGA001558_circ_g.7 BGIOSGA001558_circ_g.8 BGIOSGA001558_circ_g.9 BGIOSGA001558_circ_g.10 BGIOSGA001558_circ_g.11 BGIOSGA001558_circ_g.12 |
Support reads | NA |
Tissues | root, leaf, panicle |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | BGIOSGA001558-TA:5 |
Conservation Information | |
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Conserved circRNAs | osa_circ_001866 |
PMCS |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Zhou et al., 2021 |