Detail information of BGIOSGA034280_circ_g.1


General Information
CircRNA Name BGIOSGA034280_circ_g.1
ID in PlantcircBase osi_circ_003075
Alias 11:5627911|5635191
Organism Oryza sativa ssp. indica
Position chr11: 5627911-5635191  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA034280
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034280_circ_g.2 BGIOSGA034280_circ_igg.1 BGIOSGA034280_circ_igg.2 BGIOSGA034280_circ_g.3 BGIOSGA034280_circ_igg.4 BGIOSGA034280_circ_igg.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA034280-TA:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTATAAGGTGCATAATCGTTCCTAATCTGCTGAGAATGTAATCTTGAGCCTTCATCTTGTTG
CTCTCTCTTTAATTTTTTGCGTCTCTCTTCACGCTCttggaaatgctatgcgggaaccatccat
aagtttctttttgcctctctcataaaggaaaacaagctgacgattgtcacccccaacctgtaac
gatatatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 5634937-5635186(-)
Potential amino acid sequence MNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGLVIDLTNTTRYYS
PAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCTHGHNRTGF
MIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTPEWKRSSDL
DLNGEAKQDDDDENGDLAPVHNEVEDKVITNDDVLGDAVPYDQQDALRVVCYRLLEMPPVRGHA
QFPGSHPVSLNSENLQLLRQRYYFATWKADGTRYMMLIMRDGCFLIDRNFCFRRVQMRFPHRNL
NEGLHEMTLIDGEMIIDTVPDSGLKRRYLAYDLMALDAVSKTKLPFSERWRLLEDEIIRPRYYE
KKQFESGVKSNPMYKYDMELFSVRRKDFWLLSTVTKLLKEFIPSLSHDADGLIFQGWDDPYVTR
THEGLLKWKYPSMNSVDFLFEVGGDNRQLVFLYERGKKKLMDGSRIAFPRA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021