Detail information of BGIOSGA034280_circ_igg.2


General Information
CircRNA Name BGIOSGA034280_circ_igg.2
ID in PlantcircBase osi_circ_009400
Alias Chr11:6309257_6314083(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 5630917-5635745  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034280_circ_g.1 BGIOSGA034280_circ_g.2 BGIOSGA034280_circ_igg.1 BGIOSGA034280_circ_g.3 BGIOSGA034280_circ_igg.4 BGIOSGA034280_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATCTTCCTCAGGCAATGGTGAGGCATTTAAATCCATTGAGAAGGTCATTCAACATCCACTA
CTTCATATATCCTCAATAACGTTTTGAGATTTGCACccttggtttttgacacggcatcaagtgc
catcagatcatatgctaaatacctcctcttcaatcctgaatctggtactgtgtctataatcatt
tctccatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGTTTTTGACACGGCATCAAGTGCCATCAGATCATATGCTAAATACCTCCTCTTCAATCC
TGAATCTGGTACTGTGTCTATAATCATTTCTCCATCAATCAAAGTCATCTCATGTAGTCCCTTG
GATTGGAAAAGAAATAAGGTTAACTTTTTGCAAAACGAAATGCAGTACGACCTTTTCTCCAGAA
CAATAATGGGATCTTACTTCATTAAGATTCCTATGGGGAAAGCGCATTTGAACTCTTCTGAAGC
AAAAATTCCGATCAATCAAGAAACAGCCATCCCTCATTATAAGCATCATATATCGGGTTCCATC
AGCTTTCCATGTAGCAAAGTAGTATCGCTGTCTGAGTAGTTGCAAATTCTCACTGCGGAGCGTA
AAAAGGAATTTAGAACAAGAACATAGTTAGAGTGGGAATCAAATGAATACTAAATAAGGACCAT
TTGAAACAAAATAGTTTCATACGAGAAAAAGGACGCTACAAAAAAAAACCTCTAAATCAAAACC
GGGCATTTCTTTCCTCCCCTGAAAGAACAATAATTTTCTTCAGCATAGCAGGCGCGATCTCATA
GTTTCAAGGCTTAACTAATAAAAAAAGAGTCGCATTTAAGTTTTAATATGTGTACATAAAAAAA
TTTGGGACAAGTTACATGAAAAGATCTGAAGAACTTAATGACATAAAAGAAAGGCTTTCTGCAA
TCAGAAATCTGTTGTTCATATGTGAAATGGAGCTTTCTAAGAGAAGGGGTTGGGTGCATATTTC
CAACCCATCAAGTGCACAAATTTTACCTACCAACCTTATATTAGAGGCAGAGATTTAAATTTTT
CATAAACTACTTTCTACAGTTTTGCTTTCTGCAAAGCCCCAAAGAACATCAGAAATCAAAACGC
ACAGATAACATGTAAGAGATAATGGACTTAACACAGATACTAATAAGTTACTAGTATTACAAAC
AATGCATGAAGTCCAGATTACTGTTAGCCACCTGTTAAGAGAGACAGGATGTGATCCAGGAAAC
TGTGCATGCCCTCTCACCTGTAACAAAACAAATGCTATTATAGCAGCGTGTAAGAAACACAAGT
TGTGGTTGGCAACACATGCAGAAACTATTAAAGTTACAGAACATAAGTACCAGTTGAAAATAGC
ACAAGCATTATAACAGCTAAAAAGGAGACTAGATGAACAGACAACATAATTTGTATGTGCACAT
ATGGATGTTCAATTGACCATATAAAATTTATACTTACAGGGGGCATTTCCAGCAAGCGATAACA
TACGACACGCAGAGCATCTTGCTGATCATATGGTACAGCATCTCCTAGCACATCATCATTAGTG
ATAACTTTATCTTCCACCTCATTCTGCAAGATACAAGGGCTCAAAAGCAAGAAAATAGCTTTGA
ATATTCCAAGCAAGTTTGCTTCACGACAATTAAAAAAAACAATATGAGCCAGGAGATATAGTAA
ATTACATCCAAAGTAAAGTCCAAAAATCCAATCAAATAATAAAGTAGGTCGTATGAACTCAAAA
CTCTACCTTTATGTCCATAAATGAAAAACCTTTCGAGAATTACAAGGAATCAGGCACTTAATTC
TCTACCAAATTACTTGGAAGTAATTTCAGATTTGAATATCTGAAAATGCTTACATGTACTGGTG
CAAGATCACCATTCTCATCATCATCATCTTGCTTGGCTTCACCATTTAAATCAAGATCGGATGA
CCTTTTCCATTCTGGTGTTGAAGGGCATGTTATCATATGCTCAGGAACCTCATGATAAAATGAA
TACAGTGCTTCAATGTAGTCCCTCTTATATATACCAGGCGGTCTCCTTTTTGCAAATATGTTTA
TCGCCTAGAATGAAAATGAGGTCAAGAAGAACAGTAGAACGAAGTCAAACAAACAACATTGAGA
ATCTAGTTGGCATACCTCAGCGACGCAGGATACTTGTGTTCGCATAAGGTAATGGATAATCATG
AAACCAGTACGATTATGACCATGGGTACAGTGAACAAGAATATATTTAGGATTCTTTGACTGCT
TCTGTCGGTCAAGAAACATCATCACCTGAAATAACAGAAAAAAATCATTCCATAAATATACATT
GAATGCTGTCTGTACATATGGTTGCTAACTACATACATCTGAATCTATTGTTCTATGGTACAAA
ATAATAAAGAAAATCATTGGTTGCAGATGAGGAAATAAGTCATTAAAAATAATGTAACAGAAAA
TATATATATAATGGTTTATATACTTCAACGGGTATATCATTGAATTTGGTGAGCCCAAATTGTT
GTTGCAGAAAAACCTAGATCATTTAACCACTATACACCATTCCCATGAACTGATGATCCAAAGA
AATATGCATACAGGTAACAGGATCTTTGATAATGAAAGATGCCAAAGTGCAAACACCTTTTAAG
TTACAAAGTAGGTATAAACTACCGTGCGAAGAAATAAGTACTCCCTCTGATGCAAACTGTAATT
CGTTATACGTATTGACCAGTGGCGGAGCCACGTTAAAACTGTGGGGTTGCATCATACACCTTGA
TCATGTGAAAAATAGTGAAGAAATACATAAAACAATGAAAATTTGTATGGATTGACCCCACATA
GTTACATATTTATGCATTTTGAACGCACAGGGTTGAGAACCTAGCTCCGCCACGGGTATTGACA
GAGAGTCTCCGATGGACACATTGACCATCACTTTTTTTTATAGTTGTATGTATGTTTCAAAAAA
ATACAAAAGAGAGCTATCAAATTTACAATTACATGCGGCAAATACATTTATTTTTAGAAATAAT
AATAAAGGTAAAAAATTCCAAAATTTTGGCTTCACGTGTTCCAAGACGACACACGGTAGTTACA
TGCAAAGCCAAAATCTGCAGTTCATAACCATTTAATAACTAAACTGTCATGGCACCTTTAACAT
GTGCAGACCAAAACATCATAATAGGTATATATTGACACATTGCACAACTTAATCAATATCACAT
GAAGTTAAAAACATGTAGCTCCTAATTAAAAGGTAAAACTACTTTTTAGGCCTTGGTTCAGTTA
ATCCCTTCCCAAGAGGATTGGAGGGGATTAATTCCACATCTTTCAAATCTCAATCCCCTCCAAT
CACTTCCTCATGGGGATTAACTGAACATGCCCTTAGAGAATAAGCTCAAACACTTGAGGAACAA
AAAGAAAACAGCTCACGAGAAACAAATTGCAAACACAATGGGATAGGAAAACAAATGAAATACT
TTAAAAATGTGAAAGAATTAAGCAACAGACTCCTACTTGGACAAATAAACACCAGAATCAAATA
TACTGCTGATACAAAACATGTAGCCAAATATAGGTGTTACCTCATAGACAAACCAATTAACAGA
TTCATTATCAGGTACAGCATCTCTTCCCTTGCATGGAATCTAAAACAGAAATGTGTTAACATAG
GAAAGGCCCTTTTGATTTCAAGGATGCAGATAAGCTTAAGTTCTCTCACCTTGACATGCTTAAT
ACCTTGCCTTGTCCATTCTGCAGGTGAGTAATATCGAGTAGTATTTGTCAAATCAATCACCAAA
CCTATCTGAAAAGGGATAGGAAAAAATCGGTATAGTTCTGTTAGCAAAAGGGGGCTGACTAGGA
ATGTACGCATACGAGATAATCCGTACCATGCCAATAATATGAACATTTCGAACAAGAGGAGGAG
CAGTAAGTGCACATGTTTCACAAAAGAATTTCAGAATTGCAATCTTTTATTTATACAATAATAT
CAATTGAAAACAGCATCATCTTCGCAATTAACAAAAGGGAAATAAGTACGTAGTACAACTACAA
ACTATAAAAATAATCAACAAGTCAATACTTACTTCACGACCAGCTTTTCTTTGTTTATTAACTA
CTTGTTTGGAAGAATATCTTTTCCCAGGAGGCACCGAGTCATTGAATGTTTCATCAAGAGGAAC
CTTGGAAGGTATGATTTTGTCTATTGGCTCACCAAATGCTGGACAATTCATCCAACCTGAAGTA
ACATAGACAAAAGCAAGAATAGTCAAAATCCATTTTGCGCATGCTCATAGCTAGAAATTGCCAT
ATAAAGTTGATAACAGTTAGAAACATTTTCCAACATTTCATACCATCAGGTGCCTCTTTTATTC
GACCTCTACCAGCTCTGTTATAAGGTGCATAATCGTTCCTAATCTGCTGAGAATGTAATCTTGA
GCCTTCATCTTGTTGCTCTCTCTTTAATTTTTTGCGTCTCTCTTCACGCTCCTGCAACAATGGC
AAGATTAACATAAAAAGGTGGCATGCAAGTTTGCATGCTTGCCATTAAGAAAAACTGAAACAGA
CAGTCACCACTTTCCAATCCTCAAAATAGATTATCTGAAGCATGACCAAAACAAAAGGCAGAAA
ATTTGGATGCTATGCAAACAAAGGAAGCGACATACCAGTAAAACTAGGAAAAGGAACATATGTA
AACCAACATTAACAACTTCCAAGTTGTTTCCCATCATCTAACGATATTAACTAAGAGAACTTGC
TGAAGATAAAATGTACAGTTTGCATTTCAGTAATAAATAATCAGCTATCATTAGGAACCTTCTA
GATGGAACCAAAAGGTAAATGCAGGATGAGTGTCATGTAGTACCCTTCGCATTGTAGCAACAGC
AGACTCAACATGCTCCTCCTGTGCAAAATCAACCTCGACCTGTTGTTCATAAGGCTGTTCATCT
TCCTCAGGCAATGGTGAGGCATTTAAATCCATTGAGAAGGTCATTCAACATCCACTACTTCATA
TATCCTCAATAACGTTTTGAGATTTGCAC
Conservation Information
Conserved circRNAs osa_circ_008872
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021