Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA034280_circ_g.3 |
ID in PlantcircBase | osi_circ_003076 |
Alias | 11:5632570|5635191 |
Organism | Oryza sativa ssp. indica |
Position | chr11: 5632570-5635191 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA034280 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA034280_circ_g.1 BGIOSGA034280_circ_g.2 BGIOSGA034280_circ_igg.1 BGIOSGA034280_circ_igg.2 BGIOSGA034280_circ_igg.4 BGIOSGA034280_circ_igg.5 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA034280-TA:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5634937-5632572(-) 5632627-5635166(-) |
Potential amino acid sequence |
MNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGLVIDLTNTTRYYS PAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCTHGHNRTGF MIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTPEWKRSSDL DLNGEAKQDDDDENGDLAPVHEREERRKKLKREQQDEGSRLHSQQIRNDYAPYNRAGRGRIKEA PDGWMNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGLVIDLTNTT RYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCTHGHN RTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTPEWKR SSDLDLNGEAKQDDDDENGDLAPVHEREERRKKLKREQQDEGSRLHSQQIRNDYAPYNRAGRGR IKEAPDGWMNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGLVIDL TNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCT HGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTP EWKRSSDLDLNGEAKQDDDDENGDLAPVHEREERRKKLKREQQDEGSRLHSQQIRNDYAPYNRA GRGRIKEAPDGWMNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGL VIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYIL VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITC PSTPEWKRSSDLDLNGEAKQDDDDENGDLAPVH(-) MVKPSKMMMMRMVILHQYMSVKRDAKN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |