Detail information of BGIOSGA034280_circ_g.3


General Information
CircRNA Name BGIOSGA034280_circ_g.3
ID in PlantcircBase osi_circ_003076
Alias 11:5632570|5635191
Organism Oryza sativa ssp. indica
Position chr11: 5632570-5635191  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA034280
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034280_circ_g.1 BGIOSGA034280_circ_g.2 BGIOSGA034280_circ_igg.1 BGIOSGA034280_circ_igg.2 BGIOSGA034280_circ_igg.4 BGIOSGA034280_circ_igg.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA034280-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTATAAGGTGCATAATCGTTCCTAATCTGCTGAGAATGTAATCTTGAGCCTTCATCTTGTTG
CTCTCTCTTTAATTTTTTGCGTCTCTCTTCACGCTCatgtactggtgcaagatcaccattctca
tcatcatcatcttgcttggcttcaccatttaaatcaagatcggatgaccttttccattctggtg
ttgaaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGTACTGGTGCAAGATCACCATTCTCATCATCATCATCTTGCTTGGCTTCACCATTTAAATCA
AGATCGGATGACCTTTTCCATTCTGGTGTTGAAGGGCATGTTATCATATGCTCAGGAACCTCAT
GATAAAATGAATACAGTGCTTCAATGTAGTCCCTCTTATATATACCAGGCGGTCTCCTTTTTGC
AAATATGTTTATCGCCTAGAATGAAAATGAGGTCAAGAAGAACAGTAGAACGAAGTCAAACAAA
CAACATTGAGAATCTAGTTGGCATACCTCAGCGACGCAGGATACTTGTGTTCGCATAAGGTAAT
GGATAATCATGAAACCAGTACGATTATGACCATGGGTACAGTGAACAAGAATATATTTAGGATT
CTTTGACTGCTTCTGTCGGTCAAGAAACATCATCACCTGAAATAACAGAAAAAAATCATTCCAT
AAATATACATTGAATGCTGTCTGTACATATGGTTGCTAACTACATACATCTGAATCTATTGTTC
TATGGTACAAAATAATAAAGAAAATCATTGGTTGCAGATGAGGAAATAAGTCATTAAAAATAAT
GTAACAGAAAATATATATATAATGGTTTATATACTTCAACGGGTATATCATTGAATTTGGTGAG
CCCAAATTGTTGTTGCAGAAAAACCTAGATCATTTAACCACTATACACCATTCCCATGAACTGA
TGATCCAAAGAAATATGCATACAGGTAACAGGATCTTTGATAATGAAAGATGCCAAAGTGCAAA
CACCTTTTAAGTTACAAAGTAGGTATAAACTACCGTGCGAAGAAATAAGTACTCCCTCTGATGC
AAACTGTAATTCGTTATACGTATTGACCAGTGGCGGAGCCACGTTAAAACTGTGGGGTTGCATC
ATACACCTTGATCATGTGAAAAATAGTGAAGAAATACATAAAACAATGAAAATTTGTATGGATT
GACCCCACATAGTTACATATTTATGCATTTTGAACGCACAGGGTTGAGAACCTAGCTCCGCCAC
GGGTATTGACAGAGAGTCTCCGATGGACACATTGACCATCACTTTTTTTTATAGTTGTATGTAT
GTTTCAAAAAAATACAAAAGAGAGCTATCAAATTTACAATTACATGCGGCAAATACATTTATTT
TTAGAAATAATAATAAAGGTAAAAAATTCCAAAATTTTGGCTTCACGTGTTCCAAGACGACACA
CGGTAGTTACATGCAAAGCCAAAATCTGCAGTTCATAACCATTTAATAACTAAACTGTCATGGC
ACCTTTAACATGTGCAGACCAAAACATCATAATAGGTATATATTGACACATTGCACAACTTAAT
CAATATCACATGAAGTTAAAAACATGTAGCTCCTAATTAAAAGGTAAAACTACTTTTTAGGCCT
TGGTTCAGTTAATCCCTTCCCAAGAGGATTGGAGGGGATTAATTCCACATCTTTCAAATCTCAA
TCCCCTCCAATCACTTCCTCATGGGGATTAACTGAACATGCCCTTAGAGAATAAGCTCAAACAC
TTGAGGAACAAAAAGAAAACAGCTCACGAGAAACAAATTGCAAACACAATGGGATAGGAAAACA
AATGAAATACTTTAAAAATGTGAAAGAATTAAGCAACAGACTCCTACTTGGACAAATAAACACC
AGAATCAAATATACTGCTGATACAAAACATGTAGCCAAATATAGGTGTTACCTCATAGACAAAC
CAATTAACAGATTCATTATCAGGTACAGCATCTCTTCCCTTGCATGGAATCTAAAACAGAAATG
TGTTAACATAGGAAAGGCCCTTTTGATTTCAAGGATGCAGATAAGCTTAAGTTCTCTCACCTTG
ACATGCTTAATACCTTGCCTTGTCCATTCTGCAGGTGAGTAATATCGAGTAGTATTTGTCAAAT
CAATCACCAAACCTATCTGAAAAGGGATAGGAAAAAATCGGTATAGTTCTGTTAGCAAAAGGGG
GCTGACTAGGAATGTACGCATACGAGATAATCCGTACCATGCCAATAATATGAACATTTCGAAC
AAGAGGAGGAGCAGTAAGTGCACATGTTTCACAAAAGAATTTCAGAATTGCAATCTTTTATTTA
TACAATAATATCAATTGAAAACAGCATCATCTTCGCAATTAACAAAAGGGAAATAAGTACGTAG
TACAACTACAAACTATAAAAATAATCAACAAGTCAATACTTACTTCACGACCAGCTTTTCTTTG
TTTATTAACTACTTGTTTGGAAGAATATCTTTTCCCAGGAGGCACCGAGTCATTGAATGTTTCA
TCAAGAGGAACCTTGGAAGGTATGATTTTGTCTATTGGCTCACCAAATGCTGGACAATTCATCC
AACCTGAAGTAACATAGACAAAAGCAAGAATAGTCAAAATCCATTTTGCGCATGCTCATAGCTA
GAAATTGCCATATAAAGTTGATAACAGTTAGAAACATTTTCCAACATTTCATACCATCAGGTGC
CTCTTTTATTCGACCTCTACCAGCTCTGTTATAAGGTGCATAATCGTTCCTAATCTGCTGAGAA
TGTAATCTTGAGCCTTCATCTTGTTGCTCTCTCTTTAATTTTTTGCGTCTCTCTTCACGCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 5634937-5632572(-)
5632627-5635166(-)
Potential amino acid sequence MNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGLVIDLTNTTRYYS
PAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCTHGHNRTGF
MIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTPEWKRSSDL
DLNGEAKQDDDDENGDLAPVHEREERRKKLKREQQDEGSRLHSQQIRNDYAPYNRAGRGRIKEA
PDGWMNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGLVIDLTNTT
RYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCTHGHN
RTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTPEWKR
SSDLDLNGEAKQDDDDENGDLAPVHEREERRKKLKREQQDEGSRLHSQQIRNDYAPYNRAGRGR
IKEAPDGWMNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGLVIDL
TNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCT
HGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTP
EWKRSSDLDLNGEAKQDDDDENGDLAPVHEREERRKKLKREQQDEGSRLHSQQIRNDYAPYNRA
GRGRIKEAPDGWMNCPAFGEPIDKIIPSKVPLDETFNDSVPPGKRYSSKQVVNKQRKAGREIGL
VIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYIL
VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITC
PSTPEWKRSSDLDLNGEAKQDDDDENGDLAPVH(-)
MVKPSKMMMMRMVILHQYMSVKRDAKN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021