Plant Circular RNA Database

Detail information of Os11g0600700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os11g0600700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_009747
					
						Alias
						Os_ciR7126
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 23066681-23068972  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os11g0600700						
					
						Parent gene annotation
						
							Similar to RING domain protein. (Os11t0600700-01);Similar to RIN
G domain protein. (Os11t0600700-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0600700_circ_g.2 Os11g0600700_circ_g.3 Os11g0600700_circ_g.4 Os11g0600700_circ_g.5 Os11g0600700_circ_g.6 						
					
						Support reads
						2/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0600700-02:2
Os11t0600700-01:2

General Information
CircRNA Name	Os11g0600700_circ_g.1
ID in PlantcircBase	osa_circ_009747
Alias	Os_ciR7126
Organism	Oryza sativa
Position	chr11: 23066681-23068972 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os11g0600700
Parent gene annotation	Similar to RING domain protein. (Os11t0600700-01);Similar to RIN G domain protein. (Os11t0600700-02)
Parent gene strand	+
Alternative splicing	Os11g0600700_circ_g.2 Os11g0600700_circ_g.3 Os11g0600700_circ_g.4 Os11g0600700_circ_g.5 Os11g0600700_circ_g.6
Support reads	2/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0600700-02:2 Os11t0600700-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGACAATTTTACTTTCTTCATGTACAGTATGCTCATAGAGCTTGTGTGCAACGCTGGTGCAAT
GAGAAAGGAGACATTACATGTGAAATCTGTCATGAGgaatttgattctcctggggaattaactt
gttaggagaaaaggaatttgggatgggcgaccatgtggtggtgaatgtggaaggcttgggaaac
gatggagg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GAATTTGATTCTCCTGGGGAATTAACTTGTTAGGAGAAAAGGAATTTGGGATGGGCGACCATGT
GGTGGTGAATGTGGAAGGCTTGGGAAACGATGGAGGGGCTGTGGAGAAGCCATCTGAGGCCGTG
AACAGCTCAGTGGTGGCTGCTGCGTCGCTTTCTACGACTGTTGATACGGTCGAGGAGGGCGGTG
GAGAGGAGGAGCCGCTCATCCAGGCGGCGGAGTGCCGTATATGCCAGGAGGAGGATAGCATCAA
GAACCTCGAGAAGCCTTGTGCTTGCAGTGGCAGCCTCAAGGTCCAGCTCCTCCTCTTTTGATGT
TATTTCCATCTTGGATATGGTTCTTATGTTCCTGAAATTATTGTAGGCAGCTTGTTGTTCATGC
AGTGCATGTAGTTACTGGGGCTAAGAATAGGCTAGTTGGGGTAGTGCTTTTCCTAGTTTCCATT
TTGGCTTCATTATGGTTTTTCAATTCTATTTTCATGTTGGATAAGTTGATGGTTTTCTTGCACA
TAAATTGATCTACCATGTTAGATAAAGTTGATTTATCACATTAGATTCCCTGATAGGTTATACT
ACCTCCATTTCAGGTTATAAGACTTTCTAGTATTGCCTACATTCATATAAATGTTAATGAATCT
AGGCACACATATATGTCTAGATTCATTAACATATATATATATATATATATATATATATATATAT
ATATATATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAACCTGAAACGGAGGAAGTAGT
TGTTTAATTGCCTTGTATATGTATGTTCAGGATAGTATCACTGCCATATCATATGATGGGGATA
AAATTGTTCACCCCTATGGCAGCATAGTTTACTGGGATGCTATCTATCTACCTGTAGAGGATGC
TAACCTTTAAACATGCTGTGTACAAAAAAATTGGTTTATCCAATAACTATGCAGTATCGGGCAT
GGCATGTATGTACCTTTAAGCATGCTCGTGTGACTGTGTCCTCACTTTCTCCTGAATCTAGCTG
CAAATGGCAAGTTGGATTGTTCTCATATACTTTTTAATGAAGAACCAACCTTTGATCTCATAGG
GAAGTGATGTGGATATGGATATTGCATATCATCTGTTTGTCACAATCCCTTGTGGAGAACACTT
TGCAAAGACAAGTTGAGTCAGCACTCCGTTAAACAAAGCAGCTATGAATTCCATTTTACAATCT
TTATGGGATAAGACATACCAGTGTTTTGTGCAATGGTTTTTGAAGCAATAGTTGGGTCACCACA
TTGCTACTTTATGGTATGATGCTACCTTGGACACTAAATTTCAACAGCAATACAGTGCATGGGC
CGGTCTTACGTCATATTAATTGCCAATGGCAATACGTAATGCAAACCCACACTCAAGCAAGCAA
CCACCAATAGTAAGGCTGTGTTCGGGAGGTGGAATTCCACCTCCCCGCAAGAAAAACATGGTGG
TTTATTAATGTTTAATTAATTAAGTATTAGCTAAAAATAACTTGAAAAATGGATTAATATGATT
TTTAAAGCAACTTCCGTATATAATTTTTTTGTAAAAAATGTACCGTTTATTAGTTTGAAAAGCA
TGCACGTGGAAAATGAGAGAGGTGAGTTGGGAAAGTGAAGAAAAGAACTCAGCCTAAATATATT
GGTTTTGAGTTTGATCCAACAACGAAAAATGCATTTTTATCTCTTAATATTCTATTGGGAGCAT
ATCAAGGGCTACTCAAACCATCTGTCCCCAACTATCTCCATGACTTATCACAGTAATACTTTAT
TGATCTCTTCTGTACCGTCTGCTGGTACTGTTAAGTCTTGAGTTATGTCTTGTTATTTCATTTC
ATTACATTTCTTCCATATTTCTGATAGAAGCTCATGAGATGATTAAAGATCCTTAATAATCTTA
TAATCCATTAACCCAGTCCATTTTGTGTGAAAAACTGGATATTAAATAAGCAAATTTATGAGAT
TCGTTACTACTTTATCTGCTTTGTTTCTTTTAGCTTGGAATTTGCTTTTAAGTCATAGCTATTC
TTTGGATATAATGTGTGTTTGACATGAACTTAGAGGCTGCTTCTGTGTAGTCAACTAACTTATA
ATGTGTGTTGTCCTTGGCTTGTATACCATATGAGAAAGTACTTGTATGTTTTATCTATGTAATT
ATTTTGTATTCTGGAATTGACAATTTTACTTTCTTCATGTACAGTATGCTCATAGAGCTTGTGT
GCAACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAG
						
					

			
		

Sequences
Splice junction sequence	TTGACAATTTTACTTTCTTCATGTACAGTATGCTCATAGAGCTTGTGTGCAACGCTGGTGCAAT GAGAAAGGAGACATTACATGTGAAATCTGTCATGAGgaatttgattctcctggggaattaactt gttaggagaaaaggaatttgggatgggcgaccatgtggtggtgaatgtggaaggcttgggaaac gatggagg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAATTTGATTCTCCTGGGGAATTAACTTGTTAGGAGAAAAGGAATTTGGGATGGGCGACCATGT GGTGGTGAATGTGGAAGGCTTGGGAAACGATGGAGGGGCTGTGGAGAAGCCATCTGAGGCCGTG AACAGCTCAGTGGTGGCTGCTGCGTCGCTTTCTACGACTGTTGATACGGTCGAGGAGGGCGGTG GAGAGGAGGAGCCGCTCATCCAGGCGGCGGAGTGCCGTATATGCCAGGAGGAGGATAGCATCAA GAACCTCGAGAAGCCTTGTGCTTGCAGTGGCAGCCTCAAGGTCCAGCTCCTCCTCTTTTGATGT TATTTCCATCTTGGATATGGTTCTTATGTTCCTGAAATTATTGTAGGCAGCTTGTTGTTCATGC AGTGCATGTAGTTACTGGGGCTAAGAATAGGCTAGTTGGGGTAGTGCTTTTCCTAGTTTCCATT TTGGCTTCATTATGGTTTTTCAATTCTATTTTCATGTTGGATAAGTTGATGGTTTTCTTGCACA TAAATTGATCTACCATGTTAGATAAAGTTGATTTATCACATTAGATTCCCTGATAGGTTATACT ACCTCCATTTCAGGTTATAAGACTTTCTAGTATTGCCTACATTCATATAAATGTTAATGAATCT AGGCACACATATATGTCTAGATTCATTAACATATATATATATATATATATATATATATATATAT ATATATATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAACCTGAAACGGAGGAAGTAGT TGTTTAATTGCCTTGTATATGTATGTTCAGGATAGTATCACTGCCATATCATATGATGGGGATA AAATTGTTCACCCCTATGGCAGCATAGTTTACTGGGATGCTATCTATCTACCTGTAGAGGATGC TAACCTTTAAACATGCTGTGTACAAAAAAATTGGTTTATCCAATAACTATGCAGTATCGGGCAT GGCATGTATGTACCTTTAAGCATGCTCGTGTGACTGTGTCCTCACTTTCTCCTGAATCTAGCTG CAAATGGCAAGTTGGATTGTTCTCATATACTTTTTAATGAAGAACCAACCTTTGATCTCATAGG GAAGTGATGTGGATATGGATATTGCATATCATCTGTTTGTCACAATCCCTTGTGGAGAACACTT TGCAAAGACAAGTTGAGTCAGCACTCCGTTAAACAAAGCAGCTATGAATTCCATTTTACAATCT TTATGGGATAAGACATACCAGTGTTTTGTGCAATGGTTTTTGAAGCAATAGTTGGGTCACCACA TTGCTACTTTATGGTATGATGCTACCTTGGACACTAAATTTCAACAGCAATACAGTGCATGGGC CGGTCTTACGTCATATTAATTGCCAATGGCAATACGTAATGCAAACCCACACTCAAGCAAGCAA CCACCAATAGTAAGGCTGTGTTCGGGAGGTGGAATTCCACCTCCCCGCAAGAAAAACATGGTGG TTTATTAATGTTTAATTAATTAAGTATTAGCTAAAAATAACTTGAAAAATGGATTAATATGATT TTTAAAGCAACTTCCGTATATAATTTTTTTGTAAAAAATGTACCGTTTATTAGTTTGAAAAGCA TGCACGTGGAAAATGAGAGAGGTGAGTTGGGAAAGTGAAGAAAAGAACTCAGCCTAAATATATT GGTTTTGAGTTTGATCCAACAACGAAAAATGCATTTTTATCTCTTAATATTCTATTGGGAGCAT ATCAAGGGCTACTCAAACCATCTGTCCCCAACTATCTCCATGACTTATCACAGTAATACTTTAT TGATCTCTTCTGTACCGTCTGCTGGTACTGTTAAGTCTTGAGTTATGTCTTGTTATTTCATTTC ATTACATTTCTTCCATATTTCTGATAGAAGCTCATGAGATGATTAAAGATCCTTAATAATCTTA TAATCCATTAACCCAGTCCATTTTGTGTGAAAAACTGGATATTAAATAAGCAAATTTATGAGAT TCGTTACTACTTTATCTGCTTTGTTTCTTTTAGCTTGGAATTTGCTTTTAAGTCATAGCTATTC TTTGGATATAATGTGTGTTTGACATGAACTTAGAGGCTGCTTCTGTGTAGTCAACTAACTTATA ATGTGTGTTGTCCTTGGCTTGTATACCATATGAGAAAGTACTTGTATGTTTTATCTATGTAATT ATTTTGTATTCTGGAATTGACAATTTTACTTTCTTCATGTACAGTATGCTCATAGAGCTTGTGT GCAACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.115513024

Conservation Information
Conserved circRNAs	NA
PMCS	0.115513024

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							23068903-23066702(+)
23066732-23066710(+)
23066935-23068952(-)
						
						Potential amino acid sequence
						
							MLIELVCNAGAMRKETLHVKSVMRNLILLGN*(+)
MGDHVVVNVEGLGNDGGAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAAECRICQE
EDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEEFDSPGELTC*(+)
MLSSSWHIRHSAAWMSGSSSPPPSSTVSTVVESDAAATTELFTASDGFSTAPPSFPKPSTFTTT
WSPIPNSFSPNKLIPQENQIPHDRFHM*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	23068903-23066702(+) 23066732-23066710(+) 23066935-23068952(-)
Potential amino acid sequence	MLIELVCNAGAMRKETLHVKSVMRNLILLGN(+) MGDHVVVNVEGLGNDGGAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAAECRICQE EDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEEFDSPGELTC(+) MLSSSWHIRHSAAWMSGSSSPPPSSTVSTVVESDAAATTELFTASDGFSTAPPSFPKPSTFTTT WSPIPNSFSPNKLIPQENQIPHDRFHM*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os11g0600700_circ_g.1

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