Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d016822_circ_g.1 |
| ID in PlantcircBase | zma_circ_008719 |
| Alias | Zm05circ00103, zma_circ_0002041, GRMZM2G418916_C2 |
| Organism | Zea mays |
| Position | chr5: 177266378-177280115 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2, find_circ |
| Parent gene | Zm00001d016822 |
| Parent gene annotation |
Phosphoinositide phosphatase SAC6 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d016822_circ_g.2 Zm00001d016822_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, endosperm, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d016822_T023:17 Zm00001d016822_T002:16 Zm00001d016822_T010:17 Zm00001d016822_T016:17 Zm00001d016822_T006:16 Zm00001d016822_T012:17 Zm00001d016822_T021:17 Zm00001d016822_T024:17 Zm00001d016822_T017:17 Zm00001d016822_T004:16 Zm00001d016822_T001:17 Zm00001d016822_T020:15 Zm00001d016822_T014:17 Zm00001d016822_T025:17 Zm00001d016822_T005:16 Zm00001d016822_T022:17 Zm00001d016822_T007:17 Zm00001d016822_T013:17 Zm00001d016822_T011:17 Zm00001d016822_T003:17 Zm00001d016822_T019:17 Zm00001d016822_T015:17 Zm00001d016822_T018:17 Zm00001d016822_T009:17 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.082758588 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
177266390-177280112(+) 177266432-177280105(-) |
| Potential amino acid sequence |
MAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLVQDLPSRGSTTKHK VQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAHNTTSTDQKKMETK FSELLDSAERTIGLHFSYDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLWNGYLLEPLIENKL NQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGYAANFVESEQIMQS KGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQKKYGAVLAVDLVNT GGGEGRLRERYAKSIEPILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKDYLQKHKYFLINDK GEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKILESQLQRIGVLGAGDTISKHPTFDTNYKILW ANHGDAISIQYSGTPALKGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDGTKQDAMDLLQGHY MTSVSRDMAVPSKAGLLQSYASFRLAFALVMGALMFMLMSLRQGYPIMAETNDASPSSKLHTRL RLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLVQDLPSRGSTTKHKVQTVYGVIGVLKLAVGS YFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAHNTTSTDQKKMETKFSELLDSAERTIGLHFS YDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLWNGYLLEPLIENKLNQYLLPVIQGSFQNIQA EVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGYAANFVESEQIMQSKGFTASYVQVRGSMPFL WEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQKKYGAVLAVDLVNTGGGEGRLRERYAKSIEP ILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKDYLQKHKYFLINDKGEKIEEQTGTTRTNCID CLDRTNVTQSMIGRKILESQLQRIGVLGAGDTISKHPTFDTNYKILWANHGDAISIQYSGTPAL KGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDGTKQDAMDLLQGHYMTSVSRDMAVPSKAGLL QSYASFRLAFALVMGALMFMLMSLRQGYPIMAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGL ADLYLSVSRTSGTMNLVQDLPSRGSTTKHKVQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGH AIFKVTGLKILPCNNAHNTTSTDQKKMETKFSELLDSAERTIGLHFSYDINLTLSAQRLHDLGD EYRALPLWRQAEPRFLWNGYLLEPLIENKLNQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCT RRIGTRMWRRGADAEGYAANFVESEQIMQSKGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVR QEEAPRVLERHFHDLQKKYGAVLAVDLVNTGGGEGRLRERYAKSIEPILSEDLRYVHFDFHRIC GHIHFERLSQLYDQIKDYLQKHKYFLINDKGEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKIL ESQLQRIGVLGAGDTISKHPTFDTNYKILWANHGDAISIQYSGTPALKGDFVRYGKRTTQGILN DLRNALGRYYLNNFVDGTKQDAMDLLQGHYMTSVSRDMAVPSKAGLLQSYASFRLAFALVMGAL MFMLMSLRQGYPIMAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLV QDLPSRGSTTKHKVQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAH NTTSTDQKKMETKFSELLDSAERTIGLHFSYDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLW NGYLLEPLIENKLNQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGY AANFVESEQIMQSKGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQK KYGAVLAVDLVNTGGGEGRLRERYAKSIEPILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKD YLQKHKYFLINDKGEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKILESQLQRIGVLGAGDTIS KHPTFDTNYKILWANHGDAISIQYSGTPALKGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDG TKQDAMDLLQGHYMTSVSRDMAVPSKAGLLQSYASFRLAFALVMGALMFMLMSLRQ(+) MEFRRRAGIICLSHDGITLSQ*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |