Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016822_circ_g.1 |
ID in PlantcircBase | zma_circ_008719 |
Alias | Zm05circ00103, zma_circ_0002041, GRMZM2G418916_C2 |
Organism | Zea mays |
Position | chr5: 177266378-177280115 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d016822 |
Parent gene annotation |
Phosphoinositide phosphatase SAC6 |
Parent gene strand | + |
Alternative splicing | Zm00001d016822_circ_g.2 Zm00001d016822_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d016822_T023:17 Zm00001d016822_T002:16 Zm00001d016822_T010:17 Zm00001d016822_T016:17 Zm00001d016822_T006:16 Zm00001d016822_T012:17 Zm00001d016822_T021:17 Zm00001d016822_T024:17 Zm00001d016822_T017:17 Zm00001d016822_T004:16 Zm00001d016822_T001:17 Zm00001d016822_T020:15 Zm00001d016822_T014:17 Zm00001d016822_T025:17 Zm00001d016822_T005:16 Zm00001d016822_T022:17 Zm00001d016822_T007:17 Zm00001d016822_T013:17 Zm00001d016822_T011:17 Zm00001d016822_T003:17 Zm00001d016822_T019:17 Zm00001d016822_T015:17 Zm00001d016822_T018:17 Zm00001d016822_T009:17 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.082758588 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
177266390-177280112(+) 177266432-177280105(-) |
Potential amino acid sequence |
MAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLVQDLPSRGSTTKHK VQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAHNTTSTDQKKMETK FSELLDSAERTIGLHFSYDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLWNGYLLEPLIENKL NQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGYAANFVESEQIMQS KGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQKKYGAVLAVDLVNT GGGEGRLRERYAKSIEPILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKDYLQKHKYFLINDK GEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKILESQLQRIGVLGAGDTISKHPTFDTNYKILW ANHGDAISIQYSGTPALKGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDGTKQDAMDLLQGHY MTSVSRDMAVPSKAGLLQSYASFRLAFALVMGALMFMLMSLRQGYPIMAETNDASPSSKLHTRL RLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLVQDLPSRGSTTKHKVQTVYGVIGVLKLAVGS YFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAHNTTSTDQKKMETKFSELLDSAERTIGLHFS YDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLWNGYLLEPLIENKLNQYLLPVIQGSFQNIQA EVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGYAANFVESEQIMQSKGFTASYVQVRGSMPFL WEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQKKYGAVLAVDLVNTGGGEGRLRERYAKSIEP ILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKDYLQKHKYFLINDKGEKIEEQTGTTRTNCID CLDRTNVTQSMIGRKILESQLQRIGVLGAGDTISKHPTFDTNYKILWANHGDAISIQYSGTPAL KGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDGTKQDAMDLLQGHYMTSVSRDMAVPSKAGLL QSYASFRLAFALVMGALMFMLMSLRQGYPIMAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGL ADLYLSVSRTSGTMNLVQDLPSRGSTTKHKVQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGH AIFKVTGLKILPCNNAHNTTSTDQKKMETKFSELLDSAERTIGLHFSYDINLTLSAQRLHDLGD EYRALPLWRQAEPRFLWNGYLLEPLIENKLNQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCT RRIGTRMWRRGADAEGYAANFVESEQIMQSKGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVR QEEAPRVLERHFHDLQKKYGAVLAVDLVNTGGGEGRLRERYAKSIEPILSEDLRYVHFDFHRIC GHIHFERLSQLYDQIKDYLQKHKYFLINDKGEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKIL ESQLQRIGVLGAGDTISKHPTFDTNYKILWANHGDAISIQYSGTPALKGDFVRYGKRTTQGILN DLRNALGRYYLNNFVDGTKQDAMDLLQGHYMTSVSRDMAVPSKAGLLQSYASFRLAFALVMGAL MFMLMSLRQGYPIMAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLV QDLPSRGSTTKHKVQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAH NTTSTDQKKMETKFSELLDSAERTIGLHFSYDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLW NGYLLEPLIENKLNQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGY AANFVESEQIMQSKGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQK KYGAVLAVDLVNTGGGEGRLRERYAKSIEPILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKD YLQKHKYFLINDKGEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKILESQLQRIGVLGAGDTIS KHPTFDTNYKILWANHGDAISIQYSGTPALKGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDG TKQDAMDLLQGHYMTSVSRDMAVPSKAGLLQSYASFRLAFALVMGALMFMLMSLRQ(+) MEFRRRAGIICLSHDGITLSQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |