Detail information of Zm00001d016822_circ_g.1


General Information
CircRNA Name Zm00001d016822_circ_g.1
ID in PlantcircBase zma_circ_008719
Alias Zm05circ00103, zma_circ_0002041, GRMZM2G418916_C2
Organism Zea mays
Position chr5: 177266378-177280115  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d016822
Parent gene annotation Phosphoinositide phosphatase SAC6
Parent gene strand +
Alternative splicing Zm00001d016822_circ_g.2 Zm00001d016822_circ_g.3
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d016822_T023:17
Zm00001d016822_T002:16
Zm00001d016822_T010:17
Zm00001d016822_T016:17
Zm00001d016822_T006:16
Zm00001d016822_T012:17
Zm00001d016822_T021:17
Zm00001d016822_T024:17
Zm00001d016822_T017:17
Zm00001d016822_T004:16
Zm00001d016822_T001:17
Zm00001d016822_T020:15
Zm00001d016822_T014:17
Zm00001d016822_T025:17
Zm00001d016822_T005:16
Zm00001d016822_T022:17
Zm00001d016822_T007:17
Zm00001d016822_T013:17
Zm00001d016822_T011:17
Zm00001d016822_T003:17
Zm00001d016822_T019:17
Zm00001d016822_T015:17
Zm00001d016822_T018:17
Zm00001d016822_T009:17
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAGGCTGAATTGTGCAATTTTTCTTCCGCAGTCCTTCCGCCTTGCTTTTGCATTGGTTATGG
GAGCTCTAATGTTCATGTTGATGTCACTGAGACAGGgttatcccatcatggctgagacaaatga
tgccagcccttcgtcgaaactccatacaagattgagactctgggagtttcctgactgttatgta
tttgaacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1677
Transcript exons: 177266378-177266754,177266875-177266966,177267153-177267
210,177268230-177268286,177268569-177268602,177269263-17
7269343,177269505-177269611,177269754-177269840,17726994
3-177270020,177270294-177270364,177270453-177270551,1772
71165-177271264,177271832-177271940,177272025-177272097,
177279022-177279115,177279869-177279961,177280049-177280
115
GTTATCCCATCATGGCTGAGACAAATGATGCCAGCCCTTCGTCGAAACTCCATACAAGATTGAG
ACTCTGGGAGTTTCCTGACTGTTATGTATTTGAACCAATTGATGGCCTTGCTGACTTGTACCTA
TCAGTTAGCCGGACCAGCGGAACAATGAATCTAGTTCAAGACTTGCCATCACGTGGATCCACTA
CAAAACATAAAGTTCAAACAGTATATGGTGTGATAGGAGTACTCAAACTTGCAGTTGGATCATA
TTTTGTGGTGATCACGGATCGTGATTGTGTGGGATCCTACTTTGGACACGCAATTTTTAAAGTG
ACAGGACTAAAAATTCTTCCCTGCAATAATGCACATAACACCACCTCTACTGATCAGAAAAAAA
TGGAAACAAAATTCTCGGAGCTCCTGGATTCTGCAGAGAGGACTATTGGCCTTCACTTTTCCTA
TGATATCAACCTAACACTTTCTGCACAGAGGCTACATGATCTCGGCGATGAATATAGAGCTCTT
CCTCTTTGGAGACAGGCAGAACCAAGATTTCTATGGAATGGCTACTTGTTAGAACCTCTAATTG
AGAACAAGCTGAACCAGTACTTATTGCCAGTAATTCAAGGCAGTTTTCAAAATATCCAAGCAGA
AGTTGGATCAGAGATGGTAAATGTGACCCTGATTGCACGTAGGTGCACACGAAGGATAGGTACT
CGAATGTGGAGACGAGGAGCTGATGCAGAGGGTTATGCTGCAAACTTCGTTGAATCGGAGCAGA
TAATGCAGTCAAAAGGGTTTACAGCATCCTATGTACAAGTCCGAGGTTCTATGCCATTCTTGTG
GGAGCAGATTGTTGATTTGACATACAAACCTAGTTTTGACATTGTTAGACAAGAGGAAGCGCCT
CGTGTACTTGAGAGGCACTTCCATGATTTGCAAAAGAAATATGGAGCTGTCTTAGCCGTTGATC
TTGTCAATACAGGTGGCGGTGAGGGCCGCCTCCGTGAAAGATATGCAAAATCTATTGAACCTAT
TCTTAGTGAAGATCTAAGATATGTGCACTTCGACTTCCACCGAATTTGTGGCCATATTCACTTT
GAGCGTCTGTCTCAGCTGTATGATCAGATCAAGGACTACCTTCAGAAACATAAGTACTTCCTTA
TAAATGATAAAGGAGAGAAAATTGAGGAGCAGACTGGCACTACAAGAACAAATTGTATAGATTG
TTTGGATCGCACCAATGTAACTCAGAGCATGATTGGTCGAAAAATTCTGGAAAGCCAACTTCAA
CGTATAGGAGTTCTTGGTGCTGGTGATACAATAAGCAAACATCCAACCTTTGATACAAACTACA
AAATTTTGTGGGCCAATCATGGAGATGCAATAAGCATTCAGTACTCTGGAACTCCTGCTCTGAA
GGGAGATTTTGTTCGGTATGGGAAGCGAACTACTCAAGGAATTCTGAATGATTTGAGGAATGCA
CTTGGTAGATACTACCTGAATAACTTCGTTGATGGGACTAAGCAGGATGCCATGGATCTTCTTC
AAGGACATTACATGACATCTGTTAGTAGAGATATGGCAGTGCCAAGCAAAGCAGGACTTCTGCA
GAGTTATGCGTCCTTCCGCCTTGCTTTTGCATTGGTTATGGGAGCTCTAATGTTCATGTTGATG
TCACTGAGACAGG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.082758588
Functional Information
Coding potential Y
Potential coding position 177266390-177280112(+)
177266432-177280105(-)
Potential amino acid sequence MAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLVQDLPSRGSTTKHK
VQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAHNTTSTDQKKMETK
FSELLDSAERTIGLHFSYDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLWNGYLLEPLIENKL
NQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGYAANFVESEQIMQS
KGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQKKYGAVLAVDLVNT
GGGEGRLRERYAKSIEPILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKDYLQKHKYFLINDK
GEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKILESQLQRIGVLGAGDTISKHPTFDTNYKILW
ANHGDAISIQYSGTPALKGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDGTKQDAMDLLQGHY
MTSVSRDMAVPSKAGLLQSYASFRLAFALVMGALMFMLMSLRQGYPIMAETNDASPSSKLHTRL
RLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLVQDLPSRGSTTKHKVQTVYGVIGVLKLAVGS
YFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAHNTTSTDQKKMETKFSELLDSAERTIGLHFS
YDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLWNGYLLEPLIENKLNQYLLPVIQGSFQNIQA
EVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGYAANFVESEQIMQSKGFTASYVQVRGSMPFL
WEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQKKYGAVLAVDLVNTGGGEGRLRERYAKSIEP
ILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKDYLQKHKYFLINDKGEKIEEQTGTTRTNCID
CLDRTNVTQSMIGRKILESQLQRIGVLGAGDTISKHPTFDTNYKILWANHGDAISIQYSGTPAL
KGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDGTKQDAMDLLQGHYMTSVSRDMAVPSKAGLL
QSYASFRLAFALVMGALMFMLMSLRQGYPIMAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGL
ADLYLSVSRTSGTMNLVQDLPSRGSTTKHKVQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGH
AIFKVTGLKILPCNNAHNTTSTDQKKMETKFSELLDSAERTIGLHFSYDINLTLSAQRLHDLGD
EYRALPLWRQAEPRFLWNGYLLEPLIENKLNQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCT
RRIGTRMWRRGADAEGYAANFVESEQIMQSKGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVR
QEEAPRVLERHFHDLQKKYGAVLAVDLVNTGGGEGRLRERYAKSIEPILSEDLRYVHFDFHRIC
GHIHFERLSQLYDQIKDYLQKHKYFLINDKGEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKIL
ESQLQRIGVLGAGDTISKHPTFDTNYKILWANHGDAISIQYSGTPALKGDFVRYGKRTTQGILN
DLRNALGRYYLNNFVDGTKQDAMDLLQGHYMTSVSRDMAVPSKAGLLQSYASFRLAFALVMGAL
MFMLMSLRQGYPIMAETNDASPSSKLHTRLRLWEFPDCYVFEPIDGLADLYLSVSRTSGTMNLV
QDLPSRGSTTKHKVQTVYGVIGVLKLAVGSYFVVITDRDCVGSYFGHAIFKVTGLKILPCNNAH
NTTSTDQKKMETKFSELLDSAERTIGLHFSYDINLTLSAQRLHDLGDEYRALPLWRQAEPRFLW
NGYLLEPLIENKLNQYLLPVIQGSFQNIQAEVGSEMVNVTLIARRCTRRIGTRMWRRGADAEGY
AANFVESEQIMQSKGFTASYVQVRGSMPFLWEQIVDLTYKPSFDIVRQEEAPRVLERHFHDLQK
KYGAVLAVDLVNTGGGEGRLRERYAKSIEPILSEDLRYVHFDFHRICGHIHFERLSQLYDQIKD
YLQKHKYFLINDKGEKIEEQTGTTRTNCIDCLDRTNVTQSMIGRKILESQLQRIGVLGAGDTIS
KHPTFDTNYKILWANHGDAISIQYSGTPALKGDFVRYGKRTTQGILNDLRNALGRYYLNNFVDG
TKQDAMDLLQGHYMTSVSRDMAVPSKAGLLQSYASFRLAFALVMGALMFMLMSLRQ(+)
MEFRRRAGIICLSHDGITLSQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress