Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016822_circ_g.3 |
ID in PlantcircBase | zma_circ_008721 |
Alias | Zm05circ00104, GRMZM2G418916_C1 |
Organism | Zea mays |
Position | chr5: 177279022-177280115 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d016822 |
Parent gene annotation |
Phosphoinositide phosphatase SAC6 |
Parent gene strand | + |
Alternative splicing | Zm00001d016822_circ_g.1 Zm00001d016822_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d016822_T013:3 Zm00001d016822_T025:3 Zm00001d016822_T004:2 Zm00001d016822_T007:3 Zm00001d016822_T024:3 Zm00001d016822_T021:3 Zm00001d016822_T014:3 Zm00001d016822_T005:2 Zm00001d016822_T015:3 Zm00001d016822_T010:3 Zm00001d016822_T001:3 Zm00001d016822_T003:3 Zm00001d016822_T022:3 Zm00001d016822_T011:3 Zm00001d016822_T016:3 Zm00001d016822_T017:3 Zm00001d016822_T019:3 Zm00001d016822_T018:3 Zm00001d016822_T012:3 Zm00001d016822_T006:3 Zm00001d016822_T020:2 Zm00001d016822_T009:3 Zm00001d016822_T023:3 Zm00001d016822_T002:2 |
Conservation Information | |
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Conserved circRNAs | osa_circ_015003 |
PMCS | 0.049346618 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
177279876-177279050(+) 177279897-177279957(-) |
Potential amino acid sequence |
MDLLQGHYMTSVSRDMAVPSKAGLLQSYASFRLAFALVMGALMFMLMSLRQGMGSELLKEF*(+ ) MSLKKIHGILLSPINEVIQVVSTKCIPQIIQNSLSSSLPIPCLSDINMNIRAPITNAKARRKDA *(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |