Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016822_circ_g.2 |
ID in PlantcircBase | zma_circ_008720 |
Alias | zma_circ_0001924 |
Organism | Zea mays |
Position | chr5: 177268569-177269343 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d016822 |
Parent gene annotation |
Phosphoinositide phosphatase SAC6 |
Parent gene strand | + |
Alternative splicing | Zm00001d016822_circ_g.1 Zm00001d016822_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d016822_T003:2 Zm00001d016822_T015:2 Zm00001d016822_T019:2 Zm00001d016822_T020:2 Zm00001d016822_T009:2 Zm00001d016822_T004:2 Zm00001d016822_T016:2 Zm00001d016822_T006:2 Zm00001d016822_T023:2 Zm00001d016822_T002:2 Zm00001d016822_T010:2 Zm00001d016822_T024:2 Zm00001d016822_T022:2 Zm00001d016822_T013:2 Zm00001d016822_T012:2 Zm00001d016822_T005:2 Zm00001d016822_T007:2 Zm00001d016822_T021:2 Zm00001d016822_T018:2 Zm00001d016822_T014:2 Zm00001d016822_T001:2 Zm00001d016822_T025:2 Zm00001d016822_T017:2 Zm00001d016822_T011:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.072623945 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
177269299-177269323(+) |
Potential amino acid sequence |
MVNVTLIARRCTRRIAEPVLIASNSRQFSKYPSRSWIRDGKCDPDCT*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |