Detail information of Os03g0294200_circ_g.6


General Information
CircRNA Name Os03g0294200_circ_g.6
ID in PlantcircBase osa_circ_019336
Alias NA
Organism Oryza sativa
Position chr3: 10264672-10268842  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0294200
Parent gene annotation Similar to Fructose-6-phosphate-2-kinase/fructose-2, 6-bisphosph
atase. (Os03t0294200-01);Similar to F2KP (FRUCTOSE-2,6-BISPHOSPH
ATASE); fructose-2,6-bisphosphate 2-phosphatase. (Os03t0294200-0
2)
Parent gene strand +
Alternative splicing Os03g0294200_circ_g.3 Os03g0294200_circ_g.4 Os03g0294200_circ_g.5 Os03g0294200_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0294200-02:7
Os03t0294200-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGATGGAACAAATGGTGTGCAGTGAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTT
ATAGAAAAGCGGCTAGCGTCTGAGAGAACTGCATCTgtaggtatctttgatgccacaaacagca
caagaaaccggagaaatatgctgatgaaaatggcggaaggcaagtgtaaggtataactgaataa
gtgtgcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGGTATCTTTGATGCCACAAACAGCACAAGAAACCGGAGAAATATGCTGATGAAAATGGCGG
AAGGCAAGTGTAAGGTATAACTGAATAAGTGTGCAGTTCATTGCCTTTTTCTTGGTTGTTTGAA
TCATTTGTTTCTCACCATTGACATTGTTGGAAATTGTCCATGCAGTAATAACTGATTCTTTGTT
CAATTGGTTAGATTTATGTATCACCTTTACACTTTTCATTACAATGATCCACCGGCCACATTGC
CAGCATCGAAAAAATATCACACTTTGTATTATTAGTGACAGGTAGCACATTGCAAATGTACTCT
AGGGGCAAATGTTGTTCTAATCCTTGTTAGCATTTTTGTTCATGTGCTAGTCTCCTAAATTAAT
AATTGTACCTATAATGAATATAAACAGAAAAAGGCGCACTTATAAAGCTTACTCTTGTACAGTA
AGTCAGCAGAAATTAAGAAAATCTACTCAATGGTTCAAACATTTTTTTTTTGTACATTCTCATA
AGATACTGCCCTCGGTGACAACAAAGTCAACTCCAATTGTCTAAGCATTCAGTATAGTGATGCT
AAGACTAGTTTCTTTATAGGAACAGATTCCTGTAAAAAACCAGTTTACGAAAGCCACCACATGA
ACAGAGACATCAGCAGACTTTTGTCTTATACGGCTCACAGACAACAGCTTATCCCTTCATGTCG
TTATGTATGATAAGTCATGCAAAGCAAGTTAACCCTTCTCTATTTTCCATGGCTAGAACCATGC
AGAGCATCAACCTTCTCATCCTACCATCAACATCTAATGAACTCGGACTTATCATGCAGAGATA
TCTCTGGCCAAAACTCTCTCCGGTTCTTGCCGGGTTAACACAGACTTAGAATGCATGAGACAGT
TCGAGAAATGGCAATTGTTGGCACTTTGCAGAGACCAATTATAACAATTAGGCCCTTTATGTTC
CTTACTTCCTTTTGTTACCATCCTAATGGAATCCCAGACTAGTGAATCTGTAGTCATGTGAACA
TTTTTGTTGTGACTTTGCGGGGAAGAGTTAGACGAACTTGTTCAAGATTGGCCATAGTGTAATC
TGACATTTAACTGTGTGGGGCATACAAGGAGGAAAGTTTGTACATTCTTAAGAGGGAAATTTGT
TTTTTTTTTTAAAAAAAAATTACTAGCATTTGATGTGAACGTTTCAAAGGACTGAAGGTTACTT
CATGCTGTTATTGTGATATGGCATGTGAAATATAGGTTTCTATGATCGCATTTACATATCTGGT
TAATTTTGTGATGACAATGGCATCAAACGATTTTTCTGTTAGGATTTACACTATATGCATCCAT
GGTGATAGATACAATCATTTAAGCTACTACTTTCTAGGTTTGGGTGTTTGGGGACTTGTTGATT
TGTTAGATACAATCATTTAAGCTATTACTTTCTAGGTGTGGGTCTTTGGGAACTTGTTGATTTG
TTTTTAACACATGGGTATTTCCCTTTACTTTACAGATCATCTTTTTGGAAACAATATGTAATGA
CCAAAATGTTCTCGAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACAG
TGAGATGTCTTACTTTGTTGTGTATATCTTCATCAATATAATTTGGATTTGATTCCTGTTGTTT
CTTTGTTACAGGACAGATTTTGAAGCTGGTGTTCGAGATTTCAAAGAGAGATTGGCCTATTATG
AAAAGGTTCTTAATAATTCCTAATTTTTGTTCTGTAGTAACCTTTAGGATTTTTTTTAACATAA
TCTGGAAAAGTTAAATGTGAACAAGTAAAAACCTCTGTAGGTATACGAACCAGTGGAAGAAGGC
TCATATGTTAAGATGATTGATATGGTCAGTGGGACTGGGGGCCAATTGCAGGTATGTGTGAAAC
AGCCAACCCCATATATGTTGAATAGATCCAAAATTTAGCTTGCCTCTAATATTGTCACTAAAAA
TTATATTTTCTATTTGACAATTCTTCTCTTTTGTAATAACTATTGCCAACTTGAGCACACAACC
GAGAACTGTTTCTCCCTTTGTTTTACACAAAAATATTACTATGTGGATTAGAGGCAAATATACT
GTTGTGAGATGAACAGATATTATAACATTAACTTGAAGTCTTGTCATTATTTTCCAAAGATTGT
AATCTAGCCTCCTACTTTTTTTTTTCATCCAGATCAATGATATAAGTGGTTACTTGCCTGGCCG
GATTGTTTTCTTCTTGGTATGTATATATTATCAATATCTGAACTTCTTTTGTATAGATAATTGC
AATTTCCCTTGAATCTATGTGTTGGACAAATTATAAAATTCTAATATGGGTTCTGTTTATTGAT
TCTATGTTTCAAGCCCCTAACTTCAGGTTTCCCCTAAAAGACTATCTACATTACGGTGTATTAA
ATTGGCTGCACAGCTTTCTAAATATTTGTAACAAGATTTTTTTTAGTAAATTTCACAAAACTGC
AATTATCTGGTCAAAACTATCACTTTTCTACAATTTTAACAAGGTATTTCACAAAACTGCAACT
CTAGCAAACAAATTTATTGGAAAAACTGCAATTATATCCCCTACGTATGTATGACATGCGGGCC
TGATTTGCGACAGCATGTGTATTTCATACGTGTATGACAGGTGATTTTTCAGAGATATAAAGTT
GTAGTTTTCTGATAAACCAGATTGTTGCATCTATTTGAAATGTTTAGCTAAAGATGCAGCATAC
TGATAATTTTAACAAAATAGTCACATTATTTTGAAATTTACTCTCTTTTCCCCCCTAATCTGCT
AAACATTCTTCAATAAATGTCGGATTGAGTCTCAGGGGACTTCCTTCGAGCTATTATTGTTTTT
GTATGTGTACCTTTTGAGCTATTCATTACTGTCTCTTACGTATCAATATTAACTTCTTGCTTCC
CTTGTTTAATTATCTTCAAGTTGACATCATGCTTGTATTTTTTTTGTCCTGGGTGAGTTTTGTT
GGCATCTGATAATACAAAATGCATGTGTACTTGAAATGCACTTCATTGTTTTTGTGTTCCTTTG
ACAAAAGTTGTGTATGGGAATGAGAGTATAGATAAGAGAGATTGTAGTGGGATTGGGTATGGGA
GTTTGCTTTTTTAATCCCAATATGTTCTTACAGGTAAATTTATGTTTACTGTCGTGTACTGTTA
CAGGTGAACTGTCATCTTACACCTCGTCCCATCCTGCTAACTAGACACGGTGAAAGTTTAGATA
ATGTCAGAGGACGGATTGGTGGAGATTCATCTTTGAGGTCTTTAATTGTGTTTCCTTCAATTCT
GCCATCCAATATTTGCTGCTGCACTACATTACATTTAGTGTATAATCTTACATTAGAGATTAAT
GCATGATAAGGTCCAAATATTCAGTAATCTTGTCTTCCAGAAAAACTTCGCCAACTATTAAAAA
ATATTACTTATTAGATCTATTTCATGTAGGACATGATGTTTTACTTAAACAATACCTTTTCGTA
TCTGCATGCACTATCTCCACCACCAAATGTGCCTCATGATCAATGCAAGTTTCAAAGTTTGAAC
TATCCAACCATATTCAATTCATTGCAATGCCCTTGCACAAATCTCAAAGAACTTTGCATGGTTA
GGATAATCCATATCCTGGAAGATACAAGTGGATATGCATCTCTCTAGTTGATGTAAGGTTTTTT
TTTGCACTGTATATTTGAGCATCTTAATGTTTCTCAAGTTGTCTTCGATGAACTTTTTATCATG
CGATATCTCCAGAGCATGCAAAGCTGTCTATTTGACTTTAGATTGATCTAGTGTTAAATGTGAC
AGTAACATGCAACGAATATAGCAGGGTTGGGGGCTCTTATTTTTTACCTTAAATAGAAAAAATA
TGAGGGGTTACAGCATGCATGGTGAATGAATACCTTTAATCTTATTCATGAATATATCAATGCA
AGCATGCAACAACCAGATAATGGTAGTCAAAATGTACAGACTACAGACAAAGTAGTTCCATGCT
TGCTTGCATATGTCATATTTGAGACCTCCTTTGCTTCCACCTGATGGAACAAATGGTGTGCAGT
GAAACCGGATCGCTTTATTCAAGGAAACTTGCCAGCTTTATAGAAAAGCGGCTAGCGTCTGAGA
GAACTGCATCT
Conservation Information
Conserved circRNAs NA
PMCS 0.098838064
Functional Information
Coding potential Y
Potential coding position 10264718-10268839(+)
10266185-10268784(-)
Potential amino acid sequence MLMKMAEGKCKIIFLETICNDQNVLERNMRLKVQRSPDYAEQTDFEAGVRDFKERLAYYEKVYE
PVEEGSYVKMIDMVSGTGGQLQINDISGYLPGRIVFFLVNCHLTPRPILLTRHGESLDNVRGRI
GGDSSLSETGSLYSRKLASFIEKRLASERTASVGIFDATNSTRNRRNMLMKMAEGKCKIIFLET
ICNDQNVLERNMRLKVQRSPDYAEQTDFEAGVRDFKERLAYYEKVYEPVEEGSYVKMIDMVSGT
GGQLQINDISGYLPGRIVFFLVNCHLTPRPILLTRHGESLDNVRGRIGGDSSLSETGSLYSRKL
ASFIEKRLASERTASVGIFDATNSTRNRRNMLMKMAEGKCKIIFLETICNDQNVLERNMRLKVQ
RSPDYAEQTDFEAGVRDFKERLAYYEKVYEPVEEGSYVKMIDMVSGTGGQLQINDISGYLPGRI
VFFLVNCHLTPRPILLTRHGESLDNVRGRIGGDSSLSETGSLYSRKLASFIEKRLASERTASVG
IFDATNSTRNRRNMLMKMAEGKCKIIFLETICNDQNVLERNMRLKVQRSPDYAEQTDFEAGVRD
FKERLAYYEKVYEPVEEGSYVKMIDMVSGTGGQLQINDISGYLPGRIVFFLVNCHLTPRPILLT
RHGESLDNVRGRIGGDSSLSETGSLYSRKLASFIEKRLASERTAS(+)
MILHLPSAIFISIFLRFLVLFVASKIPTDAVLSDASRFSIKLASFLE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017