Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0477000_circ_g.4 |
ID in PlantcircBase | osa_circ_007117 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 17782365-17782807 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0477000 |
Parent gene annotation |
Armadillo-like helical domain containing protein. (Os10t0477000- 01) |
Parent gene strand | + |
Alternative splicing | Os10g0477000_circ_g.1 Os10g0477000_circ_g.2 Os10g0477000_circ_g.3 |
Support reads | 3 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0477000-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008513 |
PMCS | 0.320179571 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17782399-17782804(+) 17782423-17782735(-) |
Potential amino acid sequence |
MCLPKEFHEQCQWSLEVKFLKDFYCWAQAAVFNSADRILNVNASVAEEKACSAAFRLMFQILSW SFKHNVEHANSEAKINSGLRSDAINLKKFERSLVKVSEFSPGTASAMCLPKEFHEQCQWSLEVK FLKDFYCWAQAAVFNSADRILNVNASVAEEKACSAAFRLMFQILSWSFKHNVEHANSEAKINSG LRSDAINLKKFERSLVKVSEFSPGTASAMCLPKEFHEQCQWSLEVKFLKDFYCWAQAAVFNSAD RILNVNASVAEEKACSAAFRLMFQILSWSFKHNVEHANSEAKINSGLRSDAINLKKFERSLVKV SEFSPGTASAMCLPKEFHEQCQWSLEVKFLKDFYCWAQAAVFNSADRILNVNASVAEEKACSAA FRLMFQILSWSFKHNVEHANSEAKINSGLRSDAINLKKFERSLVK(+) MEFLRQAHSRSSPRGKLRNLHQRTLKFLQIYGITPQTRIYLSF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |