Detail information of Os10g0477000_circ_g.4


General Information
CircRNA Name Os10g0477000_circ_g.4
ID in PlantcircBase osa_circ_007117
Alias NA
Organism Oryza sativa
Position chr10: 17782365-17782807  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0477000
Parent gene annotation Armadillo-like helical domain containing protein. (Os10t0477000-
01)
Parent gene strand +
Alternative splicing Os10g0477000_circ_g.1 Os10g0477000_circ_g.2 Os10g0477000_circ_g.3
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0477000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGCACAATGTGGAGCATGCAAATTCAGAAGCTAAGATAAATTCTGGTTTGAGGAGTGATGCC
ATAAATCTGAAGAAATTTGAGCGTTCGCTGGTGAAGgtttcggagttttcccctgggactgctt
ctgctatgtgcctgcctaaggaattccatgagcaatgccaatggtcacttgaagtgaagtttct
gaaggtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCGGAGTTTTCCCCTGGGACTGCTTCTGCTATGTGCCTGCCTAAGGAATTCCATGAGCAAT
GCCAATGGTCACTTGAAGTGAAGTTTCTGAAGGTGGTTAACTGGTTTCCCAAATAATTTGAAGT
CCCATAAGAATCGCTCTTTCACATGATCATTGTAGTTTTGCTCTTCGATTGTCATCCTGATATG
CCATTTCCTGTTTCAAGGACTTCTATTGCTGGGCACAAGCTGCTGTGTTCAATTCTGCAGACAG
GATATTGAATGTAAATGCAAGTGTAGCAGAGGAGAAAGCATGCTCAGCAGCATTTCGCCTTATG
TTCCAGATATTAAGCTGGAGTTTCAAGCACAATGTGGAGCATGCAAATTCAGAAGCTAAGATAA
ATTCTGGTTTGAGGAGTGATGCCATAAATCTGAAGAAATTTGAGCGTTCGCTGGTGAAG
Conservation Information
Conserved circRNAs osi_circ_008513
PMCS 0.320179571
Functional Information
Coding potential Y
Potential coding position 17782399-17782804(+)
17782423-17782735(-)
Potential amino acid sequence MCLPKEFHEQCQWSLEVKFLKDFYCWAQAAVFNSADRILNVNASVAEEKACSAAFRLMFQILSW
SFKHNVEHANSEAKINSGLRSDAINLKKFERSLVKVSEFSPGTASAMCLPKEFHEQCQWSLEVK
FLKDFYCWAQAAVFNSADRILNVNASVAEEKACSAAFRLMFQILSWSFKHNVEHANSEAKINSG
LRSDAINLKKFERSLVKVSEFSPGTASAMCLPKEFHEQCQWSLEVKFLKDFYCWAQAAVFNSAD
RILNVNASVAEEKACSAAFRLMFQILSWSFKHNVEHANSEAKINSGLRSDAINLKKFERSLVKV
SEFSPGTASAMCLPKEFHEQCQWSLEVKFLKDFYCWAQAAVFNSADRILNVNASVAEEKACSAA
FRLMFQILSWSFKHNVEHANSEAKINSGLRSDAINLKKFERSLVK(+)
MEFLRQAHSRSSPRGKLRNLHQRTLKFLQIYGITPQTRIYLSF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017