Detail information of BGIOSGA033130_circ_g.2


General Information
CircRNA Name BGIOSGA033130_circ_g.2
ID in PlantcircBase osi_circ_008513
Alias Chr10:19536709_19537152(MH63RS2), Chr10:19990626_19991069(ZS97RS2), Chr10:19536709_19537152(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16577650-16578093  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA033130
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033130_circ_g.1 BGIOSGA033130_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033130-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGCACAATGTGGAGCATGCAAATTCAGAAGCTAAGATAAATTCTGGTTTGAGGAGTGATGCC
ATAAATCTGAAGAAATTTGAGCGTTCGCTGGTGAAGggtttcggagttttcccctgggactgct
tctgctatgtgcctgcctaaggaattccatgagcaatgccaatggtcacttgaagtgaagtttc
tgaaggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTCGGAGTTTTCCCCTGGGACTGCTTCTGCTATGTGCCTGCCTAAGGAATTCCATGAGCAA
TGCCAATGGTCACTTGAAGTGAAGTTTCTGAAGGTGGTTAACTGGTTTCCCAAATAATTTGAAG
TCCCATAAGAATCGCTCTTTCACATGATCATTGTAGTTTTGCTCTTCGATTGTCATCCTGATAT
GCCATTTCCTGTTTCAAGGACTTCTATTGCTGGGCACAAGCTGCTGTGTTCAATTCTGCAGACA
GGATATTGAATGTAAATGCAAGTGTAGCGGAGGAGAAAGCATGCTCAGCAGCATTTCGCCTTAT
GTTCCAGATATTAAGCTGGAGTTTCAAGCACAATGTGGAGCATGCAAATTCAGAAGCTAAGATA
AATTCTGGTTTGAGGAGTGATGCCATAAATCTGAAGAAATTTGAGCGTTCGCTGGTGAAG
Conservation Information
Conserved circRNAs osa_circ_007117
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021