Detail information of Os04g0620000_circ_g.14


General Information
CircRNA Name Os04g0620000_circ_g.14
ID in PlantcircBase osa_circ_025325
Alias NA
Organism Oryza sativa
Position chr4: 31508667-31511730  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0620000
Parent gene annotation C-type ATP-binding cassette (ABC) transporter, Arsenic (As) deto
xification, Reduction of As in grains (Os04t0620000-01)
Parent gene strand -
Alternative splicing Os04g0620000_circ_g.7 Os04g0620000_circ_g.8 Os04g0620000_circ_g.9 Os04g0620000_circ_g.10 Os04g0620000_circ_g.11 Os04g0620000_circ_g.12 Os04g0620000_circ_g.13 Os04g0620000_circ_g.15 Os04g0620000_circ_g.16 Os04g0620000_circ_g.17 Os04g0620000_circ_g.18 Os04g0620000_circ_g.19 Os04g0620000_circ_g.20 Os04g0620000_circ_g.21 Os04g0620000_circ_g.22 Os04g0620000_circ_g.23 Os04g0620000_circ_g.24 Os04g0620000_circ_g.25 Os04g0620000_circ_g.26 Os04g0620000_circ_g.27
Support reads 2
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0620000-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATT
AGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGATtgggagtaagtcaaggtcatgccgtaat
gaagtgacatctattgctttctcgtagcgtggaggttggaagggagacccaaacaatatattgt
cccggacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGGAGTAAGTCAAGGTCATGCCGTAATGAAGTGACATCTATTGCTTTCTCGTAGCGTGGAGGT
TGGAAGGGAGACCCAAACAATATATTGTCCCGGACCTGCAGAGATGATAACATTATATCTGTAG
AAGCCATAAAAGGTTCAATATAACAATCAACATAAATGGAGATATTGTGTCTCACAGTTGCATT
GAAGATCCATGAAACTTGAGGAACATAAGCCACTGTTCCACGAAGGACCACCGATGTATTCGAT
CCTGACACTGGTGGTATTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCCAGTGC
TTCCTACTATTGCAACCAAACTGCCCATAGGTACATCCAGATTGACGTTTGATAATGTTGGTCT
CTCAGCCTGCCAAAATTTGAAAAATTAGTTTTTGGAGCAACATCATAAGATTAGAGGAAACATG
CAGTGTTAACAACTGTATAAAATTATGTGACAAAAATGGAAACCAATAAGAGCTGGTCAGAATA
GTATTGTGAAGCTTACTACCAAATCATCAATTCATTATGAACTACGGAGACATCTGTAATAGAC
ATCTTTCTATGGATCGACCTCACTACCTCAGTAACTAGATGCTCTCTTTTGCACTGACCTTGCC
ATTCATGAAGCATGCTAGTCTATCAATACTCTAATTCAGTATTTATTTGCCCAAACTTTTGTTT
CTTTTCAGTACTCCAGACAACAGAACAATAATATATGTGTTATATTATAATATCAATGAATGAT
GAGAGTTGAATGTGTGATAGTCAACATAGATATATTTAGATACCAGGCAAATATCTGAAACATG
AAATTACCTGCGATTCCCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAGGATC
AAGAGGTGGATTGGGCAGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTTCAAT
GACACTTTACAATTAACCACCTGTCAAATTTAAAAGGAAAAAAAATAGTAAGGTGACTATGAGT
ACTAACAAAAGAGTCGTTGAACAAGAAAAGCAGAGAACTATCTCAAGCCAGCATTGGACTGTGA
CCAAAATTGTAAAAACCATTGTACTAATTTTCTCTGCCAAAGACAGATGAAAATTAACTGGTAC
AAGAATGATTATCAATCCAAACATATAAGTTCAGAAAATGATATACTTCTTAACTTGTACAGAA
AGTGGGAAACTTAACAAGACATAATTTACAGCTTTTTGCACACCTGAGTTATCAGATTTGGCAG
CATAAAAAGTGGAAATCTTAAGACAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTC
AAGTCACCTCCCAGCAGAGAGTATACACCAAATGAAACCACAGTGACAATAACGGGGATACTGT
TTAGGATGAAGCTATTCAGCTGCAGCAGACAAGGAAAAATACAAAAGATAATAGTGAGCCGACA
ATAAGGGATGCAACAACTCATTCTCATATCTATTTTAAGTTTGAGTAACTAAGTAAATTATTGT
AAACAAACTTTATAGGACCAGGAAGCACCAGTACAATCGATACTATAGCATGCAACTCCAAAAC
TTATTGTGTAATAAGGAGAGTTCATGGATGCACGATTAAAAAAGAGATCATATATAGCAGAATG
AAATTGACACAAGTGAAAGATAACTTAAATACAAAATGGACATACCGCAGCAAGCAATTGAGCG
CTGCGGAACCATGAAATTTCATCATCACGGATGTCCTGCACTTTTGACTGGAAACTTTGCTCCC
AAGCATAACATCTAACCAAGAAAATGTTTGGAACAGTTTATACCAAAATTTTAGTACTACTTCT
AGTAAAAACACAAGTAAATGTAAAGCATACTTGACCGTATCCATTGCAGCTAATATTTCATTCA
TTAGACTGATTCTCCTGTCAGTCCTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTAT
GATAACAGTCTGGTAAATTAAATAAAGAAAATGTTAACAGTCAGATCTATGTTGAAAGTAGCAA
AAGTTTGCTTAAAAGTAAAATCGTTATTTGAAATGCATATATCATTCATAAAAATAGCATAATC
TGAAAATCAGCAACTGTTAAGTGCCCTGGCAATTTGCATTATAAGCTTCAAAAGAGAAAGCATG
AGCAATATGGATTAGCCAAATATTAGGGATTTAAGCATTGACTTGATCAACTCCAATTTATGGA
CAACATCAAAGAATTTCTTACGGGGTATGGCAGAAAACTAAGCAGACGTACAAACAGTACTACA
ATACAACCTCAGGATAGATAACAGGAAGTAGAATCAACAACTAAATGATGGCATGAAAGACTCT
AATGTGAACTCTAGGCTCCATATAAGAATCGATATATCAGTACAATCTTTCTGCACATTCCCTA
AAAAGAATCAAAATATAAAAAACACAAAGTAGATATTGGTAATGTAGGGACCAGATAGAAAGTT
AAAAATGCAACATAAGACCTTCCATAATTGAATGTCTAAAGAGAAATCTACCTGAATTGGGAAC
AAAAGAACCAACATGGCTGCACCGACCAATGCAGCAGGGCCTAGTTGTGCGTATAGAAGGACCA
TGGCAATAACAATGCGGAAAGGAGCAGACCATAGACTGTGAAGTTGCTGGCACACTTGCTGCAA
AAGTAAAAAAAGTACAAACCAAATGTACAACATAAGATATAAATAACCATAGCTCCATATTGTA
GCACATATTGTATTTCTTGCTCCATTGCTCTTTCCTAACAAAACATTTCCACGGTTTTCCATTT
ACTTATCAATTCAGACATCAACAAGGTATCTAACATATCATTTGGTTTTTTATCTAATTTTATG
TTGCCAAACAATATTTAAAATCAATAATGTTGAAGAACTGGGTAACACTGATTAAACCTATGAA
ATAAAATCACACCTGAAGAGATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCA
AACTTCTTTCGACTATCATTAGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGAT
Conservation Information
Conserved circRNAs osi_circ_005744*
PMCS 0.117658184
Functional Information
Coding potential Y
Potential coding position 31511293-31508669(-)
31508706-31511699(-)
Potential amino acid sequence MVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCY
AWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFT
SLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFS
WESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVP
QVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPIAAVFRKSLRLTNDSRKKFASG
RITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVIIS
KMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAALN
SFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKR
LEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGSTGE
GKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPRYEKAIDV
TSLRHDLDLLPIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESLQQVCQQLHSLWSAPFRIV
IAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVK
CYAWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKA
FTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGY
FSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAY
VPQVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPIAAVFRKSLRLTNDSRKKFA
SGRITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVI
ISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAA
LNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNCKVSL
KRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGST
GEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPRYEKAI
DVTSLRHDLDLLP(-)
MSLHYGMTLTYSQSQLFSVSLCD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017