Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0357800_circ_g.1 |
ID in PlantcircBase | osa_circ_027558 |
Alias | NA |
Organism | Oryza sativa |
Position | chr5: 16978848-16979420 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os05g0357800 |
Parent gene annotation |
Phospholipid/glycerol acyltransferase domain containing protein. (Os05t0357800-01) |
Parent gene strand | - |
Alternative splicing | Os05g0357800_circ_g.2 Os05g0357800_circ_g.3 Os05g0357800_circ_g.4 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0357800-01:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.144078767 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16979390-16978884(+) 16978868-16979414(-) 16979372-16979414(-) |
Potential amino acid sequence |
MSPLDSLSHSTPDIESHAGLNLL*(+) MGFDVWGAVTERIQRAHQQKNSPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVKPVILRYPYKR FSPAWDSMSGVL*(-) MMLLFPEGTTTNGDYLLPFKTGAFLAKAPVKPVILRYPYKRFSPAWDSMSGVL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |