Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0357800_circ_g.3 |
ID in PlantcircBase | osa_circ_027560 |
Alias | NA |
Organism | Oryza sativa |
Position | chr5: 16978848-16980614 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os05g0357800 |
Parent gene annotation |
Phospholipid/glycerol acyltransferase domain containing protein. (Os05t0357800-01) |
Parent gene strand | - |
Alternative splicing | Os05g0357800_circ_g.1 Os05g0357800_circ_g.2 Os05g0357800_circ_g.4 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0357800-01:5 |
Conservation Information | |
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Conserved circRNAs | zma_circ_009655* |
PMCS | 0.108835031 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16980556-16978895(+) 16980529-16978850(-) |
Potential amino acid sequence |
MIRYYCPWSSQFFGLFLMLIPRHRIPCWTKSLVRIS*(+) MSSSFPSFVAKRSVARLPMVGLISKCLGCIFVQRESKTSDFKGVSGAVTERIQRAHQQKNSPMM LLFPEGTTTNGDYLLPFKTGAFLAKAPVKPVILRYPYKRFSPAWDSMSGDEHQEQSKELGRPGA VVSNHVSYVDILYHMSSSFPSFVAKRSVARLPMVGLISKCLGCIFVQRESKTSDFKGVSGAVTE RIQRAHQQKNSPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVKPVILRYPYKRFSPAWDSMSGD EHQEQSKELGRPGAVVSNHVSYVDILYHMSSSFPSFVAKRSVARLPMVGLISKCLGCIFVQRES KTSDFKGVSGAVTERIQRAHQQKNSPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVKPVILRYP YKRFSPAWDSMSGDEHQEQSKELGRPGAVVSNHVSYVDILYHMSSSFPSFVAKRSVARLPMVGL ISKCLGCIFVQRESKTSDFKGVSGAVTERIQRAHQQKNSPMMLLFPEGTTTNGDYLLPFKTGAF LAKAPVKPVILRYPYKRFSPAWDSMSG(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |