Detail information of Os10g0567400_circ_g.11


General Information
CircRNA Name Os10g0567400_circ_g.11
ID in PlantcircBase osa_circ_008067
Alias NA
Organism Oryza sativa
Position chr10: 22485515-22485757  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0567400
Parent gene annotation Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chl
orophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Simila
r to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os
10t0567400-03)
Parent gene strand -
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0567400-02:1
Os10t0567400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGACATGGAACAAGGCCTCCCATGCGTTGTTCTTTGCATAGTCAGCTCCATCATCACCGAGCAC
CGCATACACCTTGATTCCTCCATATCTACCAACACCcttgttgtgaagaaccatgatggtgagg
aggtcctgccgcgccctccaatcgcaatactggatatcgaaccggaccacctcaagagcttggt
tgacatcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 243
Transcript exons: 22485515-22485757
CTTGTTGTGAAGAACCATGATGGTGAGGAGGTCCTGCCGCGCCCTCCAATCGCAATACTGGATA
TCGAACCGGACCACCTCAAGAGCTTGGTTGACATCCAAGAACTTGCCTTTTGCAATTGGAACCC
TTGGCCCCGGGTCATCGACATGGAACAAGGCCTCCCATGCGTTGTTCTTTGCATAGTCAGCTCC
ATCATCACCGAGCACCGCATACACCTTGATTCCTCCATATCTACCAACACC

Genomic sequence CTTGTTGTGAAGAACCATGATGGTGAGGAGGTCCTGCCGCGCCCTCCAATCGCAATACTGGATA
TCGAACCGGACCACCTCAAGAGCTTGGTTGACATCCAAGAACTTGCCTTTTGCAATTGGAACCC
TTGGCCCCGGGTCATCGACATGGAACAAGGCCTCCCATGCGTTGTTCTTTGCATAGTCAGCTCC
ATCATCACCGAGCACCGCATACACCTTGATTCCTCCATATCTACCAACACC
Conservation Information
Conserved circRNAs NA
PMCS 0.225322359
Functional Information
Coding potential Y
Potential coding position 22485663-22485754(+)
22485534-22485517(-)
22485746-22485517(-)
Potential amino acid sequence MEQGLPCVVLCIVSSIITEHRIHLDSSISTNTLVVKNHDGEEVLPRPPIAILDIEPDHLKSLVD
IQELAFCNWNPWPRVIDMEQGLPCVVLCIVSSIITEHRIHLDSSISTNTLVVKNHDGEEVLPRP
PIAILDIEPDHLKSLVDIQELAFCNWNPWPRVIDMEQGLPCVVLCIVSSIITEHRIHLDSSIST
NTLVVKNHDGEEVLPRPPIAILDIEPDHLKSLVDIQELAFCNWNPWPRVIDMEQGLPCVVLCIV
SSIITEHRIHLDSSISTNT(+)
MVLHNKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDDPGPRVPIAKGKFLDVNQALEVVR
FDIQYCDWRARQDLLTIMVLHNKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDDPGPRVP
IAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKGVGRYGGIKVYAVLGDDGADYAKN
NAWEALFHVDDPGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNK(-)
MEESRCMRCSVMMELTMQRTTHGRPCSMSMTRGQGFQLQKASSWMSTKLLRWSGSISSIAIGGR
GRTSSPSWFFTTRVLVDMEESRCMRCSVMMELTMQRTTHGRPCSMSMTRGQGFQLQKASSWMST
KLLRWSGSISSIAIGGRGRTSSPSWFFTTRVLVDMEESRCMRCSVMMELTMQRTTHGRPCSMSM
TRGQGFQLQKASSWMSTKLLRWSGSISSIAIGGRGRTSSPSWFFTTRVLVDMEESRCMRCSVMM
ELTMQRTTHGRPCSMSMTRGQGFQLQKASSWMSTKLLRWSGSISSIAIGGRGRTSSPSWFFTT(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017