Detail information of BGIOSGA014577_circ_g.6


General Information
CircRNA Name BGIOSGA014577_circ_g.6
ID in PlantcircBase osi_circ_014636
Alias Chr04:28401281_28402950(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26619708-26621377  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014577
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014577_circ_igg.1 BGIOSGA014577_circ_g.1 BGIOSGA014577_circ_g.2 BGIOSGA014577_circ_g.3 BGIOSGA014577_circ_g.4 BGIOSGA014577_circ_g.5 BGIOSGA014577_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA014577-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGACCACCACCAAGTCCAGAATCATCTAACAGCAATGCCTGCAGCACTGCAACTGATTTCTT
CACAAGTGGAAGGTCAACCCAAGTCCCATTTGAGTCccttctcaagatggctataaatggtggt
aaaatcagctcaatgaactgtttccttagggggctcctgtccctaccaatagcatgccatacct
acagaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTCAAGATGGCTATAAATGGTGGTAAAATCAGCTCAATGAACTGTTTCCTTAGGGGGCTC
CTGTCCCTACCAATAGCATGCCATACCTACAGAATGAATAATATCGCATAAGCTTTATGACAAA
CGAGGAATAACTTCTTTGTTATCCCCTACAAAATAAACATTGCACGAATATAGTGCCTAAACAT
TATAAGCATAAAAGATTAACATGCAACATCTGTACATCTACAAATTTACCTTTGATTATAGTGT
TTGGATGAGCAAAGGCAGGTTACTGTTCAAAAATCAGAATCACAGGCAAAAGGTATAACATGGA
ATTCGAAACAACTACAAAATTTGGTACTCAAGAGTAAATACCGAACACACTTTATCTAACAGGT
ATCAAACATAATTGCAAACACTGAGAGTAAAACAAATCAAACAGCTAAATAGGAGAAAACGAAG
GAATGTGGAAGTATCAACAATTCAACATGTACACAACTGCAGATGGGCATCACTCTTTCTTCTC
TTTTTTAAAAGTAAATTATTAGAAAAGAAAAGAGAAAATTAACAGAAAAAGAAAAAGAAAATAG
ATTTAAGATGTGAGCATACATCTAGTCACTTAAAAATTTGCAGAGAAAGAAATCTACTTTCAGG
TGATATAATCTGTAGAACTTTCTTGAAGATAAACAATAGAAAAAAAAACTAAAATATTGCACTA
TTTTTTATTAGATGTTCCACTCCGTAGCATGGGTCCACAATCACTTAGACAAACTATATGCTTA
GGTTAAGAATATTAAAACTAACCTCTGAATAGAGAATAGAGGAAGCAACCAACACCCTTTGTCT
CTTAGATTCATTAATTGGCATATTGAGAATGGGACCAAGCACACTGAAAAATCACAAGAGTACC
AACAAAATAAGAATTGATAAAACCAGAGTAAACGCCATAGTCACCTAGATATATTATCATGTAT
ATAGGAAGCCAACTGTGTTTCCATCAAAGTTGCAGCTACCAACTGATTGTGACATAGCATGCCT
TAGAGCAGTTATATTTTTCAAGAAATAACCAATGCCAGATATTATATCAAAGCATATAGTATAC
AAATCAAGAAATGTTAGGACCCTGCCAGAGATTGTTAGCACTTCACCAGTCACCAGTGCTTTTC
TTAGCTTGGTGGATTTTGCTAGTGTTTCCCCTCTCAACATTACCCAACATTGAATAAATAATTT
TCAGCTTCCATTTTTTCTCCTGCAGTTAAACACATACCACTAACTTTGATTTTAACTGTTGATA
CTTGATGGTGCATAGTGCATACCTCCACAGAAGTGCAGATCGGGGTTTCCTTGTAGATGAGCGA
TTGTTGCTGTCAAGTGGCATCATGCTTCCAGCTTGATGGCCCAACCCTTCCGATATGACATCTT
TTATGCTGATGTTGCCTGTGAAGGCATCACCTTCACCATTGTCATCCTCCCTCATTGAAACAAG
AGTCATTCTGAGCATGCAAAGGAACGGCTGGTCGCTATCCAGCAACTGATAAAGTGCAGTCATA
ACTCCCATACCAGGGCCAGAGCCCCCTCCAATACCTAGACCACCACCAAGTCCAGAATCATCTA
ACAGCAATGCCTGCAGCACTGCAACTGATTTCTTCACAAGTGGAAGGTCAACCCAAGTCCCATT
TGAGTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021