Detail information of BGIOSGA014577_circ_g.7


General Information
CircRNA Name BGIOSGA014577_circ_g.7
ID in PlantcircBase osi_circ_014637
Alias Chr04:28416056_28416389(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26622373-26622706  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA014577
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014577_circ_igg.1 BGIOSGA014577_circ_g.1 BGIOSGA014577_circ_g.2 BGIOSGA014577_circ_g.3 BGIOSGA014577_circ_g.4 BGIOSGA014577_circ_g.5 BGIOSGA014577_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014577-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACTGAAAGATGAGCAGCATTTTCCGCTTGGGTTTTTGCTTCTTCAGGAGATAAACCCTCAGC
TGCAACACCAGCTGCAGCTGCAGCAATTACTTCAGTcatctaatggaaggccaccagcatcagt
ggacaaagatgatcgtcttgaggtcccagcatccataggctcattaccacttctacacaatgaa
tttgatcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTAATGGAAGGCCACCAGCATCAGTGGACAAAGATGATCGTCTTGAGGTCCCAGCATCCAT
AGGCTCATTACCACTTCTACACAATGAATTTGATCGACTGGCAGCAGACGAAACCATTGAGGCA
GAAGGGACAGCACTATCAAGTGATCTGGATGTGCAAAAATGTTGACCTTGTGACCTCAGATGAT
CTTCTACAAGCATCAGAATAACTATTGCATTTTCCGCTAGTGCTACTGAAAGATGAGCAGCATT
TTCCGCTTGGGTTTTTGCTTCTTCAGGAGATAAACCCTCAGCTGCAACACCAGCTGCAGCTGCA
GCAATTACTTCAGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021