Detail information of BGIOSGA014577_circ_g.5


General Information
CircRNA Name BGIOSGA014577_circ_g.5
ID in PlantcircBase osi_circ_014635
Alias Chr04:28413282_28415312(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26619602-26621632  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA014577
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014577_circ_igg.1 BGIOSGA014577_circ_g.1 BGIOSGA014577_circ_g.2 BGIOSGA014577_circ_g.3 BGIOSGA014577_circ_g.4 BGIOSGA014577_circ_g.6 BGIOSGA014577_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014577-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTGACAGATTCATAAGGTTCAGCTGCTGCTGCTGATGTAAGACGCTCCATCACAGCAGCAGA
GATTTGTCCGTTTGAATCAGCCATTGAAGTAAGCACcctcaatgggtaatgcatctgctgccaa
agcgcgatcatcggaaatcagtggattttgcccatctgaagaagttagctcatgaataccagcc
aatagtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAATGGGTAATGCATCTGCTGCCAAAGCGCGATCATCGGAAATCAGTGGATTTTGCCCATC
TGAAGAAGTTAGCTCATGAATACCAGCCAATAGTGGACGCCACCTTCTCAAGATGGCTATAAAT
GGTGGTAAAATCAGCTCAATGAACTGTTTCCTTAGGGGGCTCCTGTCCCTACCAATAGCATGCC
ATACCTACAGAATGAATAATATCGCATAAGCTTTATGACAAACGAGGAATAACTTCTTTGTTAT
CCCCTACAAAATAAACATTGCACGAATATAGTGCCTAAACATTATAAGCATAAAAGATTAACAT
GCAACATCTGTACATCTACAAATTTACCTTTGATTATAGTGTTTGGATGAGCAAAGGCAGGTTA
CTGTTCAAAAATCAGAATCACAGGCAAAAGGTATAACATGGAATTCGAAACAACTACAAAATTT
GGTACTCAAGAGTAAATACCGAACACACTTTATCTAACAGGTATCAAACATAATTGCAAACACT
GAGAGTAAAACAAATCAAACAGCTAAATAGGAGAAAACGAAGGAATGTGGAAGTATCAACAATT
CAACATGTACACAACTGCAGATGGGCATCACTCTTTCTTCTCTTTTTTAAAAGTAAATTATTAG
AAAAGAAAAGAGAAAATTAACAGAAAAAGAAAAAGAAAATAGATTTAAGATGTGAGCATACATC
TAGTCACTTAAAAATTTGCAGAGAAAGAAATCTACTTTCAGGTGATATAATCTGTAGAACTTTC
TTGAAGATAAACAATAGAAAAAAAAACTAAAATATTGCACTATTTTTTATTAGATGTTCCACTC
CGTAGCATGGGTCCACAATCACTTAGACAAACTATATGCTTAGGTTAAGAATATTAAAACTAAC
CTCTGAATAGAGAATAGAGGAAGCAACCAACACCCTTTGTCTCTTAGATTCATTAATTGGCATA
TTGAGAATGGGACCAAGCACACTGAAAAATCACAAGAGTACCAACAAAATAAGAATTGATAAAA
CCAGAGTAAACGCCATAGTCACCTAGATATATTATCATGTATATAGGAAGCCAACTGTGTTTCC
ATCAAAGTTGCAGCTACCAACTGATTGTGACATAGCATGCCTTAGAGCAGTTATATTTTTCAAG
AAATAACCAATGCCAGATATTATATCAAAGCATATAGTATACAAATCAAGAAATGTTAGGACCC
TGCCAGAGATTGTTAGCACTTCACCAGTCACCAGTGCTTTTCTTAGCTTGGTGGATTTTGCTAG
TGTTTCCCCTCTCAACATTACCCAACATTGAATAAATAATTTTCAGCTTCCATTTTTTCTCCTG
CAGTTAAACACATACCACTAACTTTGATTTTAACTGTTGATACTTGATGGTGCATAGTGCATAC
CTCCACAGAAGTGCAGATCGGGGTTTCCTTGTAGATGAGCGATTGTTGCTGTCAAGTGGCATCA
TGCTTCCAGCTTGATGGCCCAACCCTTCCGATATGACATCTTTTATGCTGATGTTGCCTGTGAA
GGCATCACCTTCACCATTGTCATCCTCCCTCATTGAAACAAGAGTCATTCTGAGCATGCAAAGG
AACGGCTGGTCGCTATCCAGCAACTGATAAAGTGCAGTCATAACTCCCATACCAGGGCCAGAGC
CCCCTCCAATACCTAGACCACCACCAAGTCCAGAATCATCTAACAGCAATGCCTGCAGCACTGC
AACTGATTTCTTCACAAGTGGAAGGTCAACCCAAGTCCCATTTGAGTCCTTCTCCAGAACAGAT
TTCCAAAATTCCCAACCACTTCCACCGCCACCAAATGTATCAGATTTGGATGGGATTCCAACGC
CATACCACAAGCGGCTCCTGTACTTCCAACTTTCAGCAAGATCTGCAATGCAGCTCCCATAAGA
AACAAATGCATGTTTGACAGATTCATAAGGTTCAGCTGCTGCTGCTGATGTAAGACGCTCCATC
ACAGCAGCAGAGATTTGTCCGTTTGAATCAGCCATTGAAGTAAGCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021