Detail information of Os03g0157800_circ_g.1


General Information
CircRNA Name Os03g0157800_circ_g.1
ID in PlantcircBase osa_circ_018023
Alias NA
Organism Oryza sativa
Position chr3: 3106753-3107561  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os03g0157800
Parent gene annotation Hypothetical conserved gene. (Os03t0157800-01);Helicase and RNas
e D C-terminal, HRDC domain containing protein. (Os03t0157800-02
);Non-protein coding transcript. (Os03t0157800-03)
Parent gene strand +
Alternative splicing Os03g0157800_circ_g.2 Os03g0157800_circ_g.3 Os03g0157800_circ_g.4 Os03g0157800_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0157800-02:4
Os03t0157800-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTCGGTTATTTCAGGTGCAAAAGCGCAGTAATGAAATTTGTTTACAGTTGTATGAAAAGGA
ACTGCTGACAGATACATCTTATCTCCACATATACGGgcttcaagggttttacagatggagcgaa
acagcctagagcacctattgcgtcacttttgtggagtcacagcaaataaagagtactgctcatt
tacaccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTCAAGGGTTTTACAGATGGAGCGAAACAGCCTAGAGCACCTATTGCGTCACTTTTGTGGAG
TCACAGCAAATAAAGAGTACTGCTCATTTACACCAACACAATTTTCAAGTATCCATGGTGACCT
ACCTAATTATCTACAATGAGTATTTATGACCAAAACATACCCCTTTTGTAGATATCAAAACGCT
GATTGGAGGTCAAGGCCACTTTCTGATGAAATGATAAAGTGTTTAACCTATAGACCCTATCTTT
CATTTATTTTGGTTTAGTCTTGCCTCGTTTTTGTCCTACATGTTTTACTATTTCATCCAGTTTT
ACCCACTTGCAAATAACTCCTGTACAGGTATGCTAGAGAAGATACACACTATCTGTTGTATATG
TATGACTTGATGAGGTTGAGACTGCAAAAGGAGTCGACATCTGACAATGATCTTCTTCTAGAGG
TAAAACCTTAGTTCACTAGTTTTTCCTTTTGTTCTGATCTGATTTTTAAGTCTGTATGAGTGAA
CATTATTTTGGTATATCCTTTTTTTCCCCTTGAATGAAGTATCGCTTTAGAACAAACTGCATGT
AGATCTTACAAAGTAACCATTGTGCGATCCTGTTCACATAAATTTACAATCTGTTTGTTAGTCA
TGATTCCTGAATATATGTGATTTTCATTAGTACTGACAAAGAGTATCAAAATAGACATTCTGAT
CACCAGTTTTCGGTTATTTCAGGTGCAAAAGCGCAGTAATGAAATTTGTTTACAGTTGTATGAA
AAGGAACTGCTGACAGATACATCTTATCTCCACATATACGG
Conservation Information
Conserved circRNAs NA
PMCS 0.158267089
Functional Information
Coding potential Y
Potential coding position 3107135-3106786(+)
Potential amino acid sequence MYDLMRLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQGFYRWSETA*(+
)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017