Detail information of Os03g0157800_circ_g.4


General Information
CircRNA Name Os03g0157800_circ_g.4
ID in PlantcircBase osa_circ_018026
Alias NA
Organism Oryza sativa
Position chr3: 3107745-3108022  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0157800
Parent gene annotation Hypothetical conserved gene. (Os03t0157800-01);Helicase and RNas
e D C-terminal, HRDC domain containing protein. (Os03t0157800-02
);Non-protein coding transcript. (Os03t0157800-03)
Parent gene strand +
Alternative splicing Os03g0157800_circ_g.1 Os03g0157800_circ_g.2 Os03g0157800_circ_g.3 Os03g0157800_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CA-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTGAAAGCCCATATGTCCATGCCATGTTTCCAAATAACAACTTATATTTTTTCTACCAATT
CGGGTTATTTAATTTATGTGTGTAATAAATATCTCAgtaagagaacatcttgttatttgtttac
ttcattatgatcattctgtctcgaactcgaatagagctaacatgtgtaacatggcattgttcct
agaaatgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 278
Transcript exons: 3107745-3108022
GTAAGAGAACATCTTGTTATTTGTTTACTTCATTATGATCATTCTGTCTCGAACTCGAATAGAG
CTAACATGTGTAACATGGCATTGTTCCTAGAAATGTATTTGTAGTTGCTATTACTATTGGCTGT
TGGCGACAGTTTCTCATTTTGGCTATGTTCATAACTTTATTGACTTAAAGTTTCTGAAAGCCCA
TATGTCCATGCCATGTTTCCAAATAACAACTTATATTTTTTCTACCAATTCGGGTTATTTAATT
TATGTGTGTAATAAATATCTCA

Genomic sequence GTAAGAGAACATCTTGTTATTTGTTTACTTCATTATGATCATTCTGTCTCGAACTCGAATAGAG
CTAACATGTGTAACATGGCATTGTTCCTAGAAATGTATTTGTAGTTGCTATTACTATTGGCTGT
TGGCGACAGTTTCTCATTTTGGCTATGTTCATAACTTTATTGACTTAAAGTTTCTGAAAGCCCA
TATGTCCATGCCATGTTTCCAAATAACAACTTATATTTTTTCTACCAATTCGGGTTATTTAATT
TATGTGTGTAATAAATATCTCA
Conservation Information
Conserved circRNAs osi_circ_013694
PMCS 0.254167416
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017