Detail information of Os03g0157800_circ_g.5


General Information
CircRNA Name Os03g0157800_circ_g.5
ID in PlantcircBase osa_circ_018027
Alias NA
Organism Oryza sativa
Position chr3: 3108222-3108643  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os03g0157800
Parent gene annotation Hypothetical conserved gene. (Os03t0157800-01);Helicase and RNas
e D C-terminal, HRDC domain containing protein. (Os03t0157800-02
);Non-protein coding transcript. (Os03t0157800-03)
Parent gene strand +
Alternative splicing Os03g0157800_circ_g.1 Os03g0157800_circ_g.2 Os03g0157800_circ_g.3 Os03g0157800_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0157800-01:2
Os03t0157800-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGACTATATCATCACCTGAGATGAAGACATCTATGAACTTATCAGGCCAGATTAGATCAATG
GATAAGGAAATACTGAGCGATAACATACATCAGCAGcaaagaagatgcctacagatactgcaga
gttaaaaagaatggtgaaatcaaaatatccatttgttgatgaaaatctggaccaagtcgtaggc
atcatatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAAGAAGATGCCTACAGATACTGCAGAGTTAAAAAGAATGGTGAAATCAAAATATCCATTTGT
TGATGAAAATCTGGACCAAGTCGTAGGCATCATATGGAATGCAACTGAATCTTCTTATGCCTTT
GAAAGCAGAGCTGAACAACTAAAGAAGGAACGTCTGGAGCAGGTATGTTTAGGTTGATCTTCTG
TGTATTTCATATCTTATTTGTTTGCTTTTGAGGATGGTGGGGAGAGGATCACAGAATGCGATTT
CTTATGTGCCAATTATTAGCATTGACGTTTAAGCACCTTTGGTTGTATCCAGCTAACGGACAGG
GTTCAGACTATATCATCACCTGAGATGAAGACATCTATGAACTTATCAGGCCAGATTAGATCAA
TGGATAAGGAAATACTGAGCGATAACATACATCAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.143124408
Functional Information
Coding potential Y
Potential coding position 3108231-3108251(+)
3108320-3108599(-)
Potential amino acid sequence MPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESRAEQLKKERLEQLTDRVQTISS
PEMKTSMNLSGQIRSMDKEILSDNIHQQQRRCLQILQS*(+)
MMPTTWSRFSSTNGYFDFTILFNSAVSVGIFFAADVCYRSVFPYPLI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017