Detail information of Os10g0567400_circ_g.8


General Information
CircRNA Name Os10g0567400_circ_g.8
ID in PlantcircBase osa_circ_008064
Alias NA
Organism Oryza sativa
Position chr10: 22484633-22485757  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0567400
Parent gene annotation Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chl
orophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Simila
r to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os
10t0567400-03)
Parent gene strand -
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0567400-02:4
Os10t0567400-01:4
Os10t0567400-03:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGACATGGAACAAGGCCTCCCATGCGTTGTTCTTTGCATAGTCAGCTCCATCATCACCGAGCAC
CGCATACACCTTGATTCCTCCATATCTACCAACACCcatggtaagggcattggattctgccctc
attaactgagccaagatgaagagggcaagctctgtgagcacatgtgttcataacacatccaggt
ctcccatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 775
Transcript exons: 22484633-22484780,22484876-22485154,22485236-22485340,22
485515-22485757
CATGGTAAGGGCATTGGATTCTGCCCTCATTAACTGAGCCAAGATGAAGAGGGCAAGCTCTGTG
AGCACATGTGTTCATAACACATCCAGGTCTCCCATCCTTTCCTCGGAAAATTACCCACTGCTCC
TCAAAACAATCTATTGGCACCATTGTATCGTCTTTTAGGTCACTGGAGAAAGCAACTGGGTACC
AGAAGTTCTTCAGACTGGGATTGTATGGCTGCACTGGACCAGACACGTTCAGACTCCGGCGAGG
AGGTTTCTTGTTTACAACACGGGACGCTGATGACGTGCTTGGAGCAAGGGAAGTGCACTCGGCT
GTAGATGCGCTAGAGCCTCCATCTTGCAACAGTCTGTCGTTGACAAGGGTCTCCATTTGTGCCA
ACTTATCAAGGGCAGATGATACTCTAGTTTCCGACAGATGAACCTGATTGTGAGCTTTTGCCAA
TTCTTCCTGTAATTCTGCAAGCTCTTTCCTCAAGGTTCCAATTGACTTGAACTCCCTTGCTAAA
GGATTAAGAACCTCTACCACCTTGTTGTGAAGAACCATGATGGTGAGGAGGTCCTGCCGCGCCC
TCCAATCGCAATACTGGATATCGAACCGGACCACCTCAAGAGCTTGGTTGACATCCAAGAACTT
GCCTTTTGCAATTGGAACCCTTGGCCCCGGGTCATCGACATGGAACAAGGCCTCCCATGCGTTG
TTCTTTGCATAGTCAGCTCCATCATCACCGAGCACCGCATACACCTTGATTCCTCCATATCTAC
CAACACC

Genomic sequence CATGGTAAGGGCATTGGATTCTGCCCTCATTAACTGAGCCAAGATGAAGAGGGCAAGCTCTGTG
AGCACATGTGTTCATAACACATCCAGGTCTCCCATCCTTTCCTCGGAAAATTACCCACTGCTCC
TCAAAACAATCTATTGGCACCTGAGAATGCGCAAACCACATCAAATAAACATAAGTTTCTGCAA
CTGCTAACTCTGACCTCGTAAAAAAATGCCTGAATCGCACGTTGTTTTTACCATTGTATCGTCT
TTTAGGTCACTGGAGAAAGCAACTGGGTACCAGAAGTTCTTCAGACTGGGATTGTATGGCTGCA
CTGGACCAGACACGTTCAGACTCCGGCGAGGAGGTTTCTTGTTTACAACACGGGACGCTGATGA
CGTGCTTGGAGCAAGGGAAGTGCACTCGGCTGTAGATGCGCTAGAGCCTCCATCTTGCAACAGT
CTGTCGTTGACAAGGGTCTCCATTTGTGCCAACTTATCAAGGGCAGATGATACTCTAGTTTCCG
ACAGATGAACCTGGATTAGACATGTAAAACATCAGAATCCATATAATATTGAAGTTTTTCATTT
GGCTCCTGTCTCCTGAAAGTACAATACCTGATTGTGAGCTTTTGCCAATTCTTCCTGTAATTCT
GCAAGCTCTTTCCTCAAGGTTCCAATTGACTTGAACTCCCTTGCTAAAGGATTAAGAACCTCTA
CCACCTGCATTTCAATGTTCAAAAATTCATTTAAGTTAACCTATGTCAGTCATCCGAAACTTCA
ACCTCAAGCATTATTCAGTATGCAGTCCAATTTTGAATCCCATGATCTGTAAAATTCAGACTAT
GAAAGCTTTGACCTCTTCTCTGAACTTGTGACTTGTCCAATGCTTCCTACCTTGTTGTGAAGAA
CCATGATGGTGAGGAGGTCCTGCCGCGCCCTCCAATCGCAATACTGGATATCGAACCGGACCAC
CTCAAGAGCTTGGTTGACATCCAAGAACTTGCCTTTTGCAATTGGAACCCTTGGCCCCGGGTCA
TCGACATGGAACAAGGCCTCCCATGCGTTGTTCTTTGCATAGTCAGCTCCATCATCACCGAGCA
CCGCATACACCTTGATTCCTCCATATCTACCAACACC
Conservation Information
Conserved circRNAs NA
PMCS 0.277405259
Functional Information
Coding potential Y
Potential coding position 22485663-22484662(+)
22485534-22485749(-)
22484664-22485749(-)
22484648-22485336(-)
Potential amino acid sequence MEQGLPCVVLCIVSSIITEHRIHLDSSISTNTHGKGIGFCPH*(+)
MVLHNKVVEVLNPLAREFKSIGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVN
DRLLQDGGSSASTAECTSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSD
LKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGCW*(-)
MRAESNALTMGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDDPGPRVPIAKGKFLDVNQAL
EVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKSIGTLRKELAELQEELAKAHNQVH
LSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAECTSLAPSTSSASRVVNKKPPRRSLNVSG
PVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLG
SVNEGRIQCPYHGCW*(-)
MPLPWVLVDMEESRCMRCSVMMELTMQRTTHGRPCSMSMTRGQGFQLQKASSWMSTKLLRWSGS
ISSIAIGGRGRTSSPSWFFTTRW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017