Detail information of Os04g0568800_circ_igg.1


General Information
CircRNA Name Os04g0568800_circ_igg.1
ID in PlantcircBase osa_circ_024939
Alias Os04circ11649/Os_ciR2422
Organism Oryza sativa
Position chr4: 28588123-28588821  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0568800_circ_ag.1 Os04g0568800_circ_g.2 Os04g0568800_circ_g.3 Os04g0568800_circ_ig.1
Support reads 2/4
Tissues panicle/root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGTAATGATATGCAAGGCACGTCAAGTTGCCCTTGCACGATCCTCAAACTGATATGTCTTAA
AGCTCGCCTTGTCAATGTATCCATAGATTCAGAGATctccacaagctgcccatcttcgagaata
tcgaacacgatgcaaagtaatttctcatatagtctaaagttgagatgatagctctggatccaat
gataggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACAAGCTGCCCATCTTCGAGAATATCGAACACGATGCAAAGTAATTTCTCATATAGTCTA
AAGTTGAGATGATAGCTCTGGATCCAATGATAGGTCTCGCCTTTAAGGTTGAATTTCTTTGGGG
CTTCACATAATTTTGCGTTGTATCTTTCAATGATAGTCAATACCTCAACAGGCCCATCAGGGAC
ACTAACTACCCAATCCTGGAATGATTGCCGGCATAAATATAGAAAGAGCTCAGTATTAGTATTA
AACCTAATTTGGAAAGAGATCAAACTTGATGTGGCTTCCGAAACACAAGTAAAATTACTTAACC
AATAAGAAAAGATAAGAAACACGAAGATTAGCTCTTGCCTCTGTATCTCTTATCTTAGAGAGAA
CTATCCGCAATGTTTCACTCATACCATACTCACGCGATCCTGGGAAGAGAAGTAATTCTTCGAG
AACATTTGCCTGGATATCAAAATTATAAACAATAATTAGGACAAACTCCCATGCTATAGGCACG
AATAAATAAACTTGCTTGCCTGTCTTCTCTGCCACTGCACTCGCAGTCTTTCTGTAGGGAAATC
AGATTTCCCAACAGAACTTAAGAGCTGTAATGATATGCAAGGCACGTCAAGTTGCCCTTGCACG
ATCCTCAAACTGATATGTCTTAAAGCTCGCCTTGTCAATGTATCCATAGATTCAGAGAT
Conservation Information
Conserved circRNAs osi_circ_005676* osi_circ_014686
PMCS 0.401247198
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015