Detail information of Os04g0568800_circ_ag.1


General Information
CircRNA Name Os04g0568800_circ_ag.1
ID in PlantcircBase osa_circ_024936
Alias Os_ciR4827
Organism Oryza sativa
Position chr4: 28587149-28589445  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0568800_circ_g.2 Os04g0568800_circ_g.3 Os04g0568800_circ_igg.1 Os04g0568800_circ_ig.1
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATCGGCCAACAGAAAGATTCCTATGAAAATTACCTGACAAATAGTGAGGCAAGAAGGACCT
CATAAGCTGTTTCTCTTATATCGTCATCTGACAATTcttattaaagtatgaatgataattctcc
aattgtctaaaacaccacttatttattttaagaatagcactgtcaaccaaacttagagccatgt
ttccgcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATTAAAGTATGAATGATAATTCTCCAATTGTCTAAAACACCACTTATTTATTTTAAGAATA
GCACTGTCAACCAAACTTAGAGCCATGTTTCCGCCACAGGCTTCCGCTGAACAAACAAAGCTGT
TTGTATACAACTCTATTTCTTTAGCATCATTATGTAATCGAAGCTTCTGTGTTTGAAGGCATGT
GTGCTTAAGTAGAAGAATTTCCCCAGTTTCAGCAAACTGAAAGAAGGAAAATAATCATAAGAGT
TAGTGTGGTGGGTATTAGAACTGACAAAATGCTCAGAGATCAAAATTGGCACTTTGAATGAAAG
AAGGAAACTTTTCCTCTAAGATAAGACACGGACTAAGCAGAGTAAAGGCGATTTAATTTATCAT
TGTTCAGAAGATAATTAATTGAACGACAACAAACTGTAACTCTTTTTCTTCTGAATAGAAAGAC
CCTGTCAAACAATGTGCTATTGGTATCAAACATGTTGGCACATTATCGGATTGCATATCAGCAG
TACCACTTGTCCATATAAACAAATCTAGGCACTTCAGCAACAAAGGAAATGTAGAGGACTTGAT
AGGAAGTCTATCTATTCACAATGTGCTCATTCTGAATTCTAAAAGGTAAAATCGTAAAACAGAT
AAAACACCCCAATTAAAGAAGAAAAGGATGATATATAGCAGTAAACAGACCTTCTTGAAAAGCA
CCCAAGCAAAGAGTGTGTCATGCAATTTCTGGGTGATACCCAATATAGTCCAGGTCAGCTTTAC
TGTTTCCAGTATTTCATCAGCCTCCTGGATGTAAAATCAAATAACAATATCAGCAACTCAGGAT
AAAACCGTTGACTTACTGTCACAAGGCAGTCCAAGAATGTTTCAGATTTAGTCATTTACTTATT
CAACAAAACCTAGACATTTTCATTTTTAAGCTGACCAACAAGGAAATAATGATGTATAGAGAGT
AAAGAAGAGCAAACCTCCACAAGCTGCCCATCTTCGAGAATATCGAACACGATGCAAAGTAATT
TCTCATATAGTCTAAAGTTGAGATGATAGCTCTGGATCCAATGATAGGTCTCGCCTTTAAGGTT
GAATTTCTTTGGGGCTTCACATAATTTTGCGTTGTATCTTTCAATGATAGTCAATACCTCAACA
GGCCCATCAGGGACACTAACTACCCAATCCTGGAATGATTGCCGGCATAAATATAGAAAGAGCT
CAGTATTAGTATTAAACCTAATTTGGAAAGAGATCAAACTTGATGTGGCTTCCGAAACACAAGT
AAAATTACTTAACCAATAAGAAAAGATAAGAAACACGAAGATTAGCTCTTGCCTCTGTATCTCT
TATCTTAGAGAGAACTATCCGCAATGTTTCACTCATACCATACTCACGCGATCCTGGGAAGAGA
AGTAATTCTTCGAGAACATTTGCCTGGATATCAAAATTATAAACAATAATTAGGACAAACTCCC
ATGCTATAGGCACGAATAAATAAACTTGCTTGCCTGTCTTCTCTGCCACTGCACTCGCAGTCTT
TCTGTAGGGAAATCAGATTTCCCAACAGAACTTAAGAGCTGTAATGATATGCAAGGCACGTCAA
GTTGCCCTTGCACGATCCTCAAACTGATATGTCTTAAAGCTCGCCTTGTCAATGTATCCATAGA
TTCAGAGATCTGGGGAAAAAAAAGCATTTTGATATAGTGAGTTTGCTCCACAGTTAACAGTATT
CACTTGCCTTGTAATCAGGACAAACAAAAAAAAAGGCTCCAAATGATTAACGAACAACAAAAAT
ATGAAAAATAATCTAGTTGAAACAATAAGAGAGTACAACTCGTGCGTTGACATTTGGCAAGCAT
GTGAACATAAATACTTTGCTATCATTGTCACAGATAAAAATAAGAATATAGAATGAAACTTTTT
TTTGTTAAACTAGTGAAAAATAAACAGTACAGAACTTGGTGAAAGAGACCTTGCCTCCATTTGT
ACACGGATCAAATCAAGAAGTTGGGAATAATGATTTTCTGGCTGAGGAGATGGATTTGATACTT
CTGTTTTAGACCTTAGACCTTTTAAGAATTTAGGCTTCTTTTCTTTCTTCTCTTCGGAGAACAG
TATTTTTCCGCTGTTGGTTACACATCATTAAAGAAGCTGAGTTTAAACAACAATATATAATGCA
ATTTTGACACCACTTACATATAAAATCGGCCAACAGAAAGATTCCTATGAAAATTACCTGACAA
ATAGTGAGGCAAGAAGGACCTCATAAGCTGTTTCTCTTATATCGTCATCTGACAATT
Conservation Information
Conserved circRNAs NA
PMCS 0.22732521
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015