Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009270_circ_g.1 |
ID in PlantcircBase | zma_circ_002715 |
Alias | circ2727 |
Organism | Zea mays |
Position | chr8: 49686841-49690489 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d009270 |
Parent gene annotation |
Protein HASTY 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d009270_circ_igg.1 Zm00001d009270_circ_g.2 Zm00001d009270_circ_g.3 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-TA |
Number of exons covered | Zm00001d009270_T004:9 Zm00001d009270_T012:5 Zm00001d009270_T007:9 Zm00001d009270_T009:8 Zm00001d009270_T001:10 Zm00001d009270_T010:8 Zm00001d009270_T014:6 Zm00001d009270_T003:8 Zm00001d009270_T008:8 Zm00001d009270_T011:9 Zm00001d009270_T005:8 Zm00001d009270_T002:9 Zm00001d009270_T013:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.010688029 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | zma-miR169m-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |