Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009270_circ_g.3 |
ID in PlantcircBase | zma_circ_009593 |
Alias | Zm08circ00020, zma_circ_0002687, GRMZM2G043238_C1 |
Organism | Zea mays |
Position | chr8: 49709066-49709563 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d009270 |
Parent gene annotation |
Protein HASTY 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d009270_circ_igg.1 Zm00001d009270_circ_g.1 Zm00001d009270_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009270_T004:1 Zm00001d009270_T005:1 Zm00001d009270_T003:1 Zm00001d009270_T002:1 Zm00001d009270_T001:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.372709561 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
49709149-49709560(+) 49709121-49709323(-) |
Potential amino acid sequence |
MENVQVMEFRHLRQLIHLVIIPFVKYCPADLWLWLVNLLQPLFVHCQQALNYSWSSLLHEGRAK VPDSIGNLSGSELKVEVMEEKLLRDLTREVCSVLWALSSPGLNNGLPSLEQLGPSNRMDSVLKN LESFASSSLTGYNVLGLAATLGEAFFRCIEGSSVTLAIMENVQVMEFRHLRQLIHLVIIPFVKY CPADLWLWLVNLLQPLFVHCQQALNYSWSSLLHEGRAKVPDSIGNLSGSELKVEVMEEKLLRDL TREVCSVLWALSSPGLNNGLPSLEQLGPSNRMDSVLKNLESFASSSLTGYNVLGLAATLGEAFF RCIEGSSVTLAIMENVQVMEFRHLRQLIHLVIIPFVKYCPADLWLWLVNLLQPLFVHCQQALNY SWSSLLHEGRAKVPDSIGNLSGSELKVEVMEEKLLRDLTREVCSVLWALSSPGLNNGLPSLEQL GPSNRMDSVLKNLESFASSSLTGYNVLGLAATLGEAFFRCIEGSSVTLAIMENVQVMEFRHLRQ LIHLVIIPFVKYCPADLWLWLVNLLQPLFVHCQQALNYSWSSLLHEGRAKVPDSIGNLSGSELK VEVMEEKLLRDLTREVCSVLWALSSPGLNNGLPSLEQLGPSNRMDSVLKNLESFASSSLT(+) MHRKNASPRVAASPKTLYPVRELEAKDSRFFKTESIRLEGPSCSKDGSPLFKPGDDKAQRTEHT SRVKSRSNFSSITSTFSSDPERLPMLSGTLARPS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |