Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009270_circ_g.2 |
ID in PlantcircBase | zma_circ_009592 |
Alias | zma_circ_0002966 |
Organism | Zea mays |
Position | chr8: 49698705-49699547 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d009270 |
Parent gene annotation |
Protein HASTY 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d009270_circ_igg.1 Zm00001d009270_circ_g.1 Zm00001d009270_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009270_T003:3 Zm00001d009270_T001:3 Zm00001d009270_T002:3 Zm00001d009270_T005:3 Zm00001d009270_T004:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.274580324 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
49698721-49698789(+) 49698723-49699501(-) 49698800-49699422(-) |
Potential amino acid sequence |
MAYLQGEGRLLRGEHNHLCEAFLVMSSSAGIQQQQEVLAWLLEPLNKMWTQVEWQTAYLSDPSG LTNMFADSQFMWSIYHTVTFFEKALKRSGTKKSSATPQAPTTTVPGYLHPMSSHLAWIVPPLLR LLRCIHVLWSEPFAQSQTAEIKAAKSMTVAEQASLLGETGKLTKGQVAPADGLLDVQRDGESKE NNIKNWLRGIRDSGTLLIPWLTFKERVAYYVVNIIIYVKRFL*(+) MVSAMFRCLGSHATSFLYCFL*(-) MTSQETLHINDYVHHVVSDPLLEGKPWYQQCSAVSDPTQPVFYIVFFRFSISLNIQQTISWSNL TFGKFTCLS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |