Detail information of Os03g0251500_circ_g.2


General Information
CircRNA Name Os03g0251500_circ_g.2
ID in PlantcircBase osa_circ_018876
Alias NA
Organism Oryza sativa
Position chr3: 7985284-7986464  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0251500
Parent gene annotation Similar to T-cell immune regulator 1 transcript variant 3 (Fragm
ent). (Os03t0251500-01)
Parent gene strand +
Alternative splicing Os03g0251500_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0251500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTT
CACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGgttgccaaaaatgcatttgttattttct
actctggggatagagcaaaagccaaaattctgaagatatgtgatgcgttcaacgcaaatcgcta
cccatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGA
TATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGC
TGTTCAGGAGGTCAGGTCTTGGAAATGTGATTTGTTAATATTCTTTGATGAAATTCTTTCTAGT
ATTTCGAAATTTAGATATAGTCCTGAATTGCTTTCAGAAGGTAGTGAGGATGCCAACCGTTGAG
AGAATCATCTGCACGAGTTGCCCTTTATGGACATTCTTGTGCTTTGCTTGTGATATGTCCAATG
TTACCATCCCTATTCTGATGTCACTGCTGTCATTTCAATTTCGAATTTGAAAAATGTTAATTAA
TTATTATAGATTTATAATAGCTAGACTTTGTTCTGTGCCTTCCAATCATTACTTTTGCTGTTGG
TGACTAATGAAAATGATTTGCTGCTATTGCATCTTGTTTGCACCATAAGGAGATATGTCATTGG
GAGAAACTTGTTTTGCAGTTGTACTACTATGAATTTCAGTCAATAAACATATAAAGTCTATGCT
TATGAATTTACAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCA
CATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGTAAGCT
ATCCTCTTATGTGATAAATTCCATATGTTAGAAAATTCCGAAATCCACCAGTCAGGTCATTATT
TCAGTTCTATATATATGATACTAATTAGCATACAAATGCTCCAGGCAAATAAGGAAAAAATAAT
TTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGG
AGTCCAGTTTTTGCAACAACTCAGGTAATTGATACACCACCCTGGTGCTAACAATTTATTAGCC
TACTGTTTCCATTTGTTTATTTGGGAGATTATTCTTCATGTGATCTCAATGATTTACAACTTTA
TTTTGCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAAT
TTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCG
GCTTTCCAGGAAATTGTTGATGCATACGG
Conservation Information
Conserved circRNAs NA
PMCS 0.147366434
Functional Information
Coding potential Y
Potential coding position 7985913-7985341(+)
7986324-7985321(+)
7985301-7986369(-)
Potential amino acid sequence MGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWSPVFATTQIQDAL
QRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGLPKMHLLFSTLGIEQKPKF
*(+)
MRSSELLLIANPKLVQFFKFSTQQNLPRHISRQISSLRLSRKLLMHTGCQKCICYFLLWG*(+)
MHFWQPVCINNFLESRSELICLEICRGRFCCVENLKN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017