Plant Circular RNA Database

Detail information of Os07g0206700_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os07g0206700_circ_g.4
					
						ID in PlantcircBase
						osa_circ_033175
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 5752738-5755007  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0206700						
					
						Parent gene annotation
						
							Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C
- methyltransferase 1) (Sterol C-methyltransferase 1). (Os07t020
6700-01);Similar to Cycloartenol-C-24-methyltransferase 1. (Os07
t0206700-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0206700_circ_g.3 Os07g0206700_circ_g.5 Os07g0206700_circ_g.6 Os07g0206700_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0206700-02:8
Os07t0206700-01:8

General Information
CircRNA Name	Os07g0206700_circ_g.4
ID in PlantcircBase	osa_circ_033175
Alias	NA
Organism	Oryza sativa
Position	chr7: 5752738-5755007 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0206700
Parent gene annotation	Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C - methyltransferase 1) (Sterol C-methyltransferase 1). (Os07t020 6700-01);Similar to Cycloartenol-C-24-methyltransferase 1. (Os07 t0206700-02)
Parent gene strand	-
Alternative splicing	Os07g0206700_circ_g.3 Os07g0206700_circ_g.5 Os07g0206700_circ_g.6 Os07g0206700_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0206700-02:8 Os07t0206700-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATTCTGTCTTCTGAGAGACTAAGATGATTTACCATGTCTGTGTAGTTGGACTTTCTTGCTTCT
TCTTTTCCTCCATAGTATCCATGGTATTTCTCATACctcaaacccagcatcttttgcagcttga
agacattgttgagtgcttcggatatctggcaggccattgccaagctcgatttcatccttgatcc
tcttgtgt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCAAACCCAGCATCTTTTGCAGCTTGAAGACATTGTTGAGTGCTTCGGATATCTGGCAGGCCA
TTGCCAAGCTCGATTTCATCCTTGATCCTCTTGTGTGTTGCATTGTTCGGTTCATAGTGATCAG
TAATACACCACTCATACACAGCAAAACACTGGCCAGGCTTCAATACACGATAGATCTCCTTATA
GCAGCCAACCTTTGACATGAAAAAACCAATTGACTTTGTGTCGCAAGGAGGGATTAAAGTTGAT
GATGAGTTTTAATATACAAGCAATAATTTGCAATCATACCGGATCAGGTGCGTGGCATGTTGCC
TCAATGGCATAGACAGCATCAAAAGTGTTATCAGAAAACGGCATCTTCATGAAGTCTGCCTGTA
TAGAGACCAATATGTAGAATGTAACTGTTTGTCCTTCAGCTTATATATATTGTCAAATAAGTCT
TCTCTGTACAGCTAAGCAAGTGCAGAGAGTCTACGCAAGGTAATTTGCAATATGTGATGGTTGC
TGGAAAGGGATAAATAACATTTGCACAGAGATGCAGCTGCAAATAGATGATTGACTACTAAAAG
ATGGGGGAAAGAGGCAAAGAGCCAAAAAGAATGTCTATTTTAGCTAACTATACCTTCACAAAGT
CGCAAGTTCCACTAACTCCTGCTACCCGATTAAGCTCCTGGATATTAAAACAAAAATCTTATGT
CAACACAGGAGTAATGTGATGAACAGCAAACGCTGAAAACTGTTTACTAATCTGAAGTTCTTAA
CCATATGCAGAAGTAGAGTAAATCAAATTAAGTAAGGGAACATCAATTAACCTTTCCCCTAGTT
ATCTGGTACTCATTGTTGTTCAATCCAGTGACTGAAGCCAAGCTGCAGGAAACAGCAGATCATG
GCCACATTAGTCATCTCTAGTTCATAATCCATAGTGAGGGGAAAAAAAGAGAAGTTTCCACACT
TTTGAGGACAGTATTTTAGCAGAAAATGGATCATCAACACTGATATTTGGGAAAAAGAAATGCC
CTAAGTAAACAATGAGCTCAATGCCATCTTCACCCAAAAAAATAACATATAATGAGGAAGTACA
GGGTTGATACTTAACGACGTTGTCCTGGCACCATTATCCAAGATCAATTTACCACACGTTTAAT
TTTTAAATGTCAAATATTTATTATGCATATTAAAATTTCTGGCCCAAACACATTACAAGCAAGT
GGACAGAAGGCCCATGAATCAAACCTAAATTTGGCAATTTCTCTTAGTGGTCCGCCTATTCCAC
AACCGACGTCCAAAACCTACAGTAGGGAAGTGAAGTTAACACTTTCATTCTAATGTTGTAGTGT
AGAACCAGCAGGAAATCTTTATGATAGGTTTAAATAGGAAAATTAACCTTCATTCCTGGTTTCA
CTCCAAGCTGAAGGGCAAGAAAGTGCTCATGTCGCTTAATGCTTTCACGTAGGGATTCTCCATT
CCATCTAAAACATTCAGGAACATGACAAGTTTCTGTCACTAGATGTCAGGTAATATGCAAAACT
TCAACTACGTTCTCGTATTTCATTACAATGAGCACAGATGATCTCTCTAAAACCCTCACCTGTG
AGCAAAGTGGAAGGATTCACCCCAACCATACTCATAGAAGCTGGTGGCAAGATCATAGTATTTA
TTAACCTGATAAGGCATTAATGCATTAGTTGCTAATATAAAAACTGAAAAACCCAAAATTATCT
CCAATTAGCATGGGGTAAATGGGTGATGCAGCAAACAAAAAATTGTCACAAACTCTAAATTTGA
AGGTTTCCTTCTTTCAAACAGAATAAAGAGGGGTTCAATTAGAAATATGTGACTAAAATACAAT
TGACATATAGCATAAACAGCAGAACCTAGAATATGTGTACTGTCTTGCTTCAACACTCAACATG
ACAATTTAAAAAGCACAATATTTGAGTTGTCTTAGATATCTCTTTGAATCAGTCGTGCTTAGTT
AAATTTATAATCTAGTCAAGAAGAACTGAAGATTAACAGCTTTTTATCGTGCAAAAGTTGAAGC
AAATTACAGACAAACAGTTGAAGCAAATTATGCAGATATAATCCTTTTAACTGAGCATCTAGAA
AATGACTTGAGTAGGAAAGCAACAAATTTACAAAATAAGATATTCACAAAAATGTAATAATTCT
GTCTTCTGAGAGACTAAGATGATTTACCATGTCTGTGTAGTTGGACTTTCTTGCTTCTTCTTTT
CCTCCATAGTATCCATGGTATTTCTCATAC
						
					

			
		

Sequences
Splice junction sequence	AATTCTGTCTTCTGAGAGACTAAGATGATTTACCATGTCTGTGTAGTTGGACTTTCTTGCTTCT TCTTTTCCTCCATAGTATCCATGGTATTTCTCATACctcaaacccagcatcttttgcagcttga agacattgttgagtgcttcggatatctggcaggccattgccaagctcgatttcatccttgatcc tcttgtgt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCAAACCCAGCATCTTTTGCAGCTTGAAGACATTGTTGAGTGCTTCGGATATCTGGCAGGCCA TTGCCAAGCTCGATTTCATCCTTGATCCTCTTGTGTGTTGCATTGTTCGGTTCATAGTGATCAG TAATACACCACTCATACACAGCAAAACACTGGCCAGGCTTCAATACACGATAGATCTCCTTATA GCAGCCAACCTTTGACATGAAAAAACCAATTGACTTTGTGTCGCAAGGAGGGATTAAAGTTGAT GATGAGTTTTAATATACAAGCAATAATTTGCAATCATACCGGATCAGGTGCGTGGCATGTTGCC TCAATGGCATAGACAGCATCAAAAGTGTTATCAGAAAACGGCATCTTCATGAAGTCTGCCTGTA TAGAGACCAATATGTAGAATGTAACTGTTTGTCCTTCAGCTTATATATATTGTCAAATAAGTCT TCTCTGTACAGCTAAGCAAGTGCAGAGAGTCTACGCAAGGTAATTTGCAATATGTGATGGTTGC TGGAAAGGGATAAATAACATTTGCACAGAGATGCAGCTGCAAATAGATGATTGACTACTAAAAG ATGGGGGAAAGAGGCAAAGAGCCAAAAAGAATGTCTATTTTAGCTAACTATACCTTCACAAAGT CGCAAGTTCCACTAACTCCTGCTACCCGATTAAGCTCCTGGATATTAAAACAAAAATCTTATGT CAACACAGGAGTAATGTGATGAACAGCAAACGCTGAAAACTGTTTACTAATCTGAAGTTCTTAA CCATATGCAGAAGTAGAGTAAATCAAATTAAGTAAGGGAACATCAATTAACCTTTCCCCTAGTT ATCTGGTACTCATTGTTGTTCAATCCAGTGACTGAAGCCAAGCTGCAGGAAACAGCAGATCATG GCCACATTAGTCATCTCTAGTTCATAATCCATAGTGAGGGGAAAAAAAGAGAAGTTTCCACACT TTTGAGGACAGTATTTTAGCAGAAAATGGATCATCAACACTGATATTTGGGAAAAAGAAATGCC CTAAGTAAACAATGAGCTCAATGCCATCTTCACCCAAAAAAATAACATATAATGAGGAAGTACA GGGTTGATACTTAACGACGTTGTCCTGGCACCATTATCCAAGATCAATTTACCACACGTTTAAT TTTTAAATGTCAAATATTTATTATGCATATTAAAATTTCTGGCCCAAACACATTACAAGCAAGT GGACAGAAGGCCCATGAATCAAACCTAAATTTGGCAATTTCTCTTAGTGGTCCGCCTATTCCAC AACCGACGTCCAAAACCTACAGTAGGGAAGTGAAGTTAACACTTTCATTCTAATGTTGTAGTGT AGAACCAGCAGGAAATCTTTATGATAGGTTTAAATAGGAAAATTAACCTTCATTCCTGGTTTCA CTCCAAGCTGAAGGGCAAGAAAGTGCTCATGTCGCTTAATGCTTTCACGTAGGGATTCTCCATT CCATCTAAAACATTCAGGAACATGACAAGTTTCTGTCACTAGATGTCAGGTAATATGCAAAACT TCAACTACGTTCTCGTATTTCATTACAATGAGCACAGATGATCTCTCTAAAACCCTCACCTGTG AGCAAAGTGGAAGGATTCACCCCAACCATACTCATAGAAGCTGGTGGCAAGATCATAGTATTTA TTAACCTGATAAGGCATTAATGCATTAGTTGCTAATATAAAAACTGAAAAACCCAAAATTATCT CCAATTAGCATGGGGTAAATGGGTGATGCAGCAAACAAAAAATTGTCACAAACTCTAAATTTGA AGGTTTCCTTCTTTCAAACAGAATAAAGAGGGGTTCAATTAGAAATATGTGACTAAAATACAAT TGACATATAGCATAAACAGCAGAACCTAGAATATGTGTACTGTCTTGCTTCAACACTCAACATG ACAATTTAAAAAGCACAATATTTGAGTTGTCTTAGATATCTCTTTGAATCAGTCGTGCTTAGTT AAATTTATAATCTAGTCAAGAAGAACTGAAGATTAACAGCTTTTTATCGTGCAAAAGTTGAAGC AAATTACAGACAAACAGTTGAAGCAAATTATGCAGATATAATCCTTTTAACTGAGCATCTAGAA AATGACTTGAGTAGGAAAGCAACAAATTTACAAAATAAGATATTCACAAAAATGTAATAATTCT GTCTTCTGAGAGACTAAGATGATTTACCATGTCTGTGTAGTTGGACTTTCTTGCTTCTTCTTTT CCTCCATAGTATCCATGGTATTTCTCATAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007093* 						
					
						PMCS
						0.125491975

Conservation Information
Conserved circRNAs	osi_circ_007093*
PMCS	0.125491975

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5754993-5752823(+)
5754945-5755004(-)
5752882-5755004(-)
						
						Potential amino acid sequence
						
							MVFLIPQTQHLLQLEDIVECFGYLAGHCQARFHP*(+)
MVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGG
PLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEA
TCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIRSTQQC
LQAAKDAGFEV*(-)
MSGVLLITMNRTMQHTRGSRMKSSLAMACQISEALNNVFKLQKMLGLRYEKYHGYYGGKEEARK
SNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVG
CGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAV
YAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR
STQQCLQAAKDAGFEV*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5754993-5752823(+) 5754945-5755004(-) 5752882-5755004(-)
Potential amino acid sequence	MVFLIPQTQHLLQLEDIVECFGYLAGHCQARFHP(+) MVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGG PLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEA TCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIRSTQQC LQAAKDAGFEV(-) MSGVLLITMNRTMQHTRGSRMKSSLAMACQISEALNNVFKLQKMLGLRYEKYHGYYGGKEEARK SNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVG CGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAV YAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR STQQCLQAAKDAGFEV*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0206700_circ_g.4

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