Plant Circular RNA Database

Detail information of Os07g0206700_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os07g0206700_circ_g.7
					
						ID in PlantcircBase
						osa_circ_033178
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 5753978-5756090  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0206700						
					
						Parent gene annotation
						
							Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C
- methyltransferase 1) (Sterol C-methyltransferase 1). (Os07t020
6700-01);Similar to Cycloartenol-C-24-methyltransferase 1. (Os07
t0206700-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0206700_circ_g.3 Os07g0206700_circ_g.4 Os07g0206700_circ_g.5 Os07g0206700_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0206700-02:4
Os07t0206700-01:5

General Information
CircRNA Name	Os07g0206700_circ_g.7
ID in PlantcircBase	osa_circ_033178
Alias	NA
Organism	Oryza sativa
Position	chr7: 5753978-5756090 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0206700
Parent gene annotation	Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C - methyltransferase 1) (Sterol C-methyltransferase 1). (Os07t020 6700-01);Similar to Cycloartenol-C-24-methyltransferase 1. (Os07 t0206700-02)
Parent gene strand	-
Alternative splicing	Os07g0206700_circ_g.3 Os07g0206700_circ_g.4 Os07g0206700_circ_g.5 Os07g0206700_circ_g.6
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0206700-02:4 Os07t0206700-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCCGACTTGACCTCATCCTTGGTGATCTTCCCCCCGAGTCCAGATGCAAGATCCATGGCCCCAG
ACCTCGACATCGCGGCGTCGATCACCGGAGCTCCACctaaatttggcaatttctcttagtggtc
cgcctattccacaaccgacgtccaaaacctacagtagggaagtgaagttaacactttcattcta
atgttgta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTAAATTTGGCAATTTCTCTTAGTGGTCCGCCTATTCCACAACCGACGTCCAAAACCTACAGTA
GGGAAGTGAAGTTAACACTTTCATTCTAATGTTGTAGTGTAGAACCAGCAGGAAATCTTTATGA
TAGGTTTAAATAGGAAAATTAACCTTCATTCCTGGTTTCACTCCAAGCTGAAGGGCAAGAAAGT
GCTCATGTCGCTTAATGCTTTCACGTAGGGATTCTCCATTCCATCTAAAACATTCAGGAACATG
ACAAGTTTCTGTCACTAGATGTCAGGTAATATGCAAAACTTCAACTACGTTCTCGTATTTCATT
ACAATGAGCACAGATGATCTCTCTAAAACCCTCACCTGTGAGCAAAGTGGAAGGATTCACCCCA
ACCATACTCATAGAAGCTGGTGGCAAGATCATAGTATTTATTAACCTGATAAGGCATTAATGCA
TTAGTTGCTAATATAAAAACTGAAAAACCCAAAATTATCTCCAATTAGCATGGGGTAAATGGGT
GATGCAGCAAACAAAAAATTGTCACAAACTCTAAATTTGAAGGTTTCCTTCTTTCAAACAGAAT
AAAGAGGGGTTCAATTAGAAATATGTGACTAAAATACAATTGACATATAGCATAAACAGCAGAA
CCTAGAATATGTGTACTGTCTTGCTTCAACACTCAACATGACAATTTAAAAAGCACAATATTTG
AGTTGTCTTAGATATCTCTTTGAATCAGTCGTGCTTAGTTAAATTTATAATCTAGTCAAGAAGA
ACTGAAGATTAACAGCTTTTTATCGTGCAAAAGTTGAAGCAAATTACAGACAAACAGTTGAAGC
AAATTATGCAGATATAATCCTTTTAACTGAGCATCTAGAAAATGACTTGAGTAGGAAAGCAACA
AATTTACAAAATAAGATATTCACAAAAATGTAATAATTCTGTCTTCTGAGAGACTAAGATGATT
TACCATGTCTGTGTAGTTGGACTTTCTTGCTTCTTCTTTTCCTCCATAGTATCCATGGTATTTC
TCATACCTTGCAAAACCAATTTATTTAAAATAAATAACAGTAAAATACAGGCCAAGTTCTGAGC
ACAAAAATCCTTTTTCTGAGTGTCAATAAAATTCTTGCTAAGCAGTTGATATGTTTTTTATACA
GGGTAAATATTGAATGTATTGACAAATTCTTAATAGAATGTGCTAAAACTGGCATAGATAGAGA
TAGTTTAAAAGAGGATAAGCTTGTTTTAATAATTCTGTAATGGTGCCACAGTATGTACTCCTTT
CCTTGATTAACCATAGAGCATAGTTTGACCTTGCACGAGAAATCAAGGATTAAAGAGGTGACAA
AGGTGATGAAACATTAGAGAAGATGACGTGGGTGCACTCTCATTATTGATTCAGAAAGATGAGC
GAGCATACTTTGTGGCAGTAACAAATAAAAGCAAATGAGAAGGAGTAAAAGACATGGGAATGGT
AGAAAAAGCTCATATCTTATATTTATTGCTGGGTCTTTGGAATATTAATGGGAGGGGAGTACAA
TACGTATGGACAAGTTGGCATGGCTTGAAGTAGCCTATATAGTGATGGCCTGATGGGCGACCAC
AAAGCATCACATTCAATACACATGATAAAAACCTAGTACTATTCTAATAAGATGAAATAGGTGC
AATGCATCAGGAGTTTTCAGATGTCCAGAACTGCTACCACCAAAAAAGAAGAAGAAAATTTCTG
GGTGCAGAACGAAAAGTCGAGCAAACAACAGTGAGAAATTACGAAATCAGTGAATCTGTGCTTT
CCTTGTTTAATCTCAGTCATACAAACTGAATTCTGAACCCTGAACTCTGAAGAGATGCATTCAA
GTACAGCACAGCAGACATGCAAGTACAGTACATCACCAGAATCAAACCTGCATATCTAAATCTA
AATCTAAATGCCAACAAAAATAAAAGAGAGAGAGAAAATAATAATCAACCAACGCAGAGAAACA
AAGAGCAGAAGATGCTTTACTCATCGACAGCCGACTTGACCTCATCCTTGGTGATCTTCCCCCC
GAGTCCAGATGCAAGATCCATGGCCCCAGACCTCGACATCGCGGCGTCGATCACCGGAGCTCCA
C
						
					

			
		

Sequences
Splice junction sequence	GCCGACTTGACCTCATCCTTGGTGATCTTCCCCCCGAGTCCAGATGCAAGATCCATGGCCCCAG ACCTCGACATCGCGGCGTCGATCACCGGAGCTCCACctaaatttggcaatttctcttagtggtc cgcctattccacaaccgacgtccaaaacctacagtagggaagtgaagttaacactttcattcta atgttgta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTAAATTTGGCAATTTCTCTTAGTGGTCCGCCTATTCCACAACCGACGTCCAAAACCTACAGTA GGGAAGTGAAGTTAACACTTTCATTCTAATGTTGTAGTGTAGAACCAGCAGGAAATCTTTATGA TAGGTTTAAATAGGAAAATTAACCTTCATTCCTGGTTTCACTCCAAGCTGAAGGGCAAGAAAGT GCTCATGTCGCTTAATGCTTTCACGTAGGGATTCTCCATTCCATCTAAAACATTCAGGAACATG ACAAGTTTCTGTCACTAGATGTCAGGTAATATGCAAAACTTCAACTACGTTCTCGTATTTCATT ACAATGAGCACAGATGATCTCTCTAAAACCCTCACCTGTGAGCAAAGTGGAAGGATTCACCCCA ACCATACTCATAGAAGCTGGTGGCAAGATCATAGTATTTATTAACCTGATAAGGCATTAATGCA TTAGTTGCTAATATAAAAACTGAAAAACCCAAAATTATCTCCAATTAGCATGGGGTAAATGGGT GATGCAGCAAACAAAAAATTGTCACAAACTCTAAATTTGAAGGTTTCCTTCTTTCAAACAGAAT AAAGAGGGGTTCAATTAGAAATATGTGACTAAAATACAATTGACATATAGCATAAACAGCAGAA CCTAGAATATGTGTACTGTCTTGCTTCAACACTCAACATGACAATTTAAAAAGCACAATATTTG AGTTGTCTTAGATATCTCTTTGAATCAGTCGTGCTTAGTTAAATTTATAATCTAGTCAAGAAGA ACTGAAGATTAACAGCTTTTTATCGTGCAAAAGTTGAAGCAAATTACAGACAAACAGTTGAAGC AAATTATGCAGATATAATCCTTTTAACTGAGCATCTAGAAAATGACTTGAGTAGGAAAGCAACA AATTTACAAAATAAGATATTCACAAAAATGTAATAATTCTGTCTTCTGAGAGACTAAGATGATT TACCATGTCTGTGTAGTTGGACTTTCTTGCTTCTTCTTTTCCTCCATAGTATCCATGGTATTTC TCATACCTTGCAAAACCAATTTATTTAAAATAAATAACAGTAAAATACAGGCCAAGTTCTGAGC ACAAAAATCCTTTTTCTGAGTGTCAATAAAATTCTTGCTAAGCAGTTGATATGTTTTTTATACA GGGTAAATATTGAATGTATTGACAAATTCTTAATAGAATGTGCTAAAACTGGCATAGATAGAGA TAGTTTAAAAGAGGATAAGCTTGTTTTAATAATTCTGTAATGGTGCCACAGTATGTACTCCTTT CCTTGATTAACCATAGAGCATAGTTTGACCTTGCACGAGAAATCAAGGATTAAAGAGGTGACAA AGGTGATGAAACATTAGAGAAGATGACGTGGGTGCACTCTCATTATTGATTCAGAAAGATGAGC GAGCATACTTTGTGGCAGTAACAAATAAAAGCAAATGAGAAGGAGTAAAAGACATGGGAATGGT AGAAAAAGCTCATATCTTATATTTATTGCTGGGTCTTTGGAATATTAATGGGAGGGGAGTACAA TACGTATGGACAAGTTGGCATGGCTTGAAGTAGCCTATATAGTGATGGCCTGATGGGCGACCAC AAAGCATCACATTCAATACACATGATAAAAACCTAGTACTATTCTAATAAGATGAAATAGGTGC AATGCATCAGGAGTTTTCAGATGTCCAGAACTGCTACCACCAAAAAAGAAGAAGAAAATTTCTG GGTGCAGAACGAAAAGTCGAGCAAACAACAGTGAGAAATTACGAAATCAGTGAATCTGTGCTTT CCTTGTTTAATCTCAGTCATACAAACTGAATTCTGAACCCTGAACTCTGAAGAGATGCATTCAA GTACAGCACAGCAGACATGCAAGTACAGTACATCACCAGAATCAAACCTGCATATCTAAATCTA AATCTAAATGCCAACAAAAATAAAAGAGAGAGAGAAAATAATAATCAACCAACGCAGAGAAACA AAGAGCAGAAGATGCTTTACTCATCGACAGCCGACTTGACCTCATCCTTGGTGATCTTCCCCCC GAGTCCAGATGCAAGATCCATGGCCCCAGACCTCGACATCGCGGCGTCGATCACCGGAGCTCCA C

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.110433475

Conservation Information
Conserved circRNAs	NA
PMCS	0.110433475

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5756046-5753997(+)
5756035-5754153(+)
5754993-5753978(+)
5756066-5756005(-)
						
						Potential amino acid sequence
						
							MAPDLDIAASITGAPPKFGNFS*(+)
MQDPWPQTSTSRRRSPELHLNLAISLSGPPIPQPTSKTFIPGFTPS*(+)
MVFLILIDSRLDLILGDLPPESRCKIHGPRPRHRGVDHRSST*(+)
MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEY
GWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFRWSSGDR
RRDVEVWGHGSCIWTRGEDHQG*(-)
						
						Sponge-miRNAs
						
							osa-miR2868 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5756046-5753997(+) 5756035-5754153(+) 5754993-5753978(+) 5756066-5756005(-)
Potential amino acid sequence	MAPDLDIAASITGAPPKFGNFS(+) MQDPWPQTSTSRRRSPELHLNLAISLSGPPIPQPTSKTFIPGFTPS(+) MVFLILIDSRLDLILGDLPPESRCKIHGPRPRHRGVDHRSST(+) MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEY GWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFRWSSGDR RRDVEVWGHGSCIWTRGEDHQG(-)
Sponge-miRNAs	osa-miR2868
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0206700_circ_g.7

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