Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G05830_circ_g.7 |
ID in PlantcircBase | ath_circ_012925 |
Alias | AT2G05830_C1 |
Organism | Arabidpsis thaliana |
Position | chr2: 2230283-2230610 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, CIRI2 |
Parent gene | AT2G05830 |
Parent gene annotation |
Methylthioribose-1-phosphate isomerase |
Parent gene strand | + |
Alternative splicing | AT2G05830_circ_g.1 AT2G05830_circ_g.2 AT2G05830_circ_g.3 AT2G05830_circ_g.4 AT2G05830_circ_g.5 AT2G05830_circ_g.6 AT2G05830_circ_g.8 AT2G05830_circ_g.9 AT2G05830_circ_g.10 |
Support reads | 1 |
Tissues | whole_plant, leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G05830.4:2 AT2G05830.3:2 AT2G05830.2:2 AT2G05830.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.642649177 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2230492-2230607(+) 2230376-2230285(-) |
Potential amino acid sequence |
MLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCNTGSRPTAVNLADAALKLKHVIAKALAT ATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCNTGSRPTAVNL ADAALKLKHVIAKALATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKL SVLTHCNTGSRPTAVNLADAALKLKHVIAKALATATEAKSIFKAYIEASEDMLEDDVVSNKAIG NFGLSLLRQQAKNPDKLSVLTHCNTG(+) MDLASVAVAKAFAITCLSFKAASARLTAVGRLPVLQWVKTESLSGFLACCLNKLKPKFPIALFE TTSSSSISSLASIYALKMDLASVAVAKAFAITCLSFKAASARLTAVGRLPVLQWVKTESLSGFL ACCLNKLKPKFPIALFETTSSSSISSLASIYALKMDLASVAVAKAFAITCLSFKAASARLTAVG RLPVLQWVKTESLSGFLACCLNKLKPKFPIALFETTSSSSISSLASIYALKMDLASVAVAKAFA ITCLSFKAASARLTAVGR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Zhang et al., 2019 |