Detail information of AT2G05830_circ_g.7


General Information
CircRNA Name AT2G05830_circ_g.7
ID in PlantcircBase ath_circ_012925
Alias AT2G05830_C1
Organism Arabidpsis thaliana
Position chr2: 2230283-2230610  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, CIRI2
Parent gene AT2G05830
Parent gene annotation Methylthioribose-1-phosphate isomerase
Parent gene strand +
Alternative splicing AT2G05830_circ_g.1 AT2G05830_circ_g.2 AT2G05830_circ_g.3 AT2G05830_circ_g.4 AT2G05830_circ_g.5 AT2G05830_circ_g.6 AT2G05830_circ_g.8 AT2G05830_circ_g.9 AT2G05830_circ_g.10
Support reads 1
Tissues whole_plant, leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05830.4:2
AT2G05830.3:2
AT2G05830.2:2
AT2G05830.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGA
TAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGccgtccaacagcagttaatcttgcagat
gctgctttgaaacttaaacatgttatagcaaaggccttggctactgccaccgaagccaaatcca
ttttcaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 243
Transcript exons: 2230283-2230382,2230468-2230610
CCGTCCAACAGCAGTTAATCTTGCAGATGCTGCTTTGAAACTTAAACATGTTATAGCAAAGGCC
TTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGGCATATATTGAAGCTAGTGAGGATATGC
TTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACA
AGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAG

Genomic sequence CCGTCCAACAGCAGTTAATCTTGCAGATGCTGCTTTGAAACTTAAACATGTTATAGCAAAGGCC
TTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGGTATCAAGAAGTTTCGTAATTCATCTGT
GTGTGTGCCTTTTGCTTTTGTAAGTTTAGCTCATTCTCTGTGCTTGTTGTTCTTCAGGCATATA
TTGAAGCTAGTGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGG
TTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAAC
ACTGGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.642649177
Functional Information
Coding potential Y
Potential coding position 2230492-2230607(+)
2230376-2230285(-)
Potential amino acid sequence MLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCNTGSRPTAVNLADAALKLKHVIAKALAT
ATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCNTGSRPTAVNL
ADAALKLKHVIAKALATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKL
SVLTHCNTGSRPTAVNLADAALKLKHVIAKALATATEAKSIFKAYIEASEDMLEDDVVSNKAIG
NFGLSLLRQQAKNPDKLSVLTHCNTG(+)
MDLASVAVAKAFAITCLSFKAASARLTAVGRLPVLQWVKTESLSGFLACCLNKLKPKFPIALFE
TTSSSSISSLASIYALKMDLASVAVAKAFAITCLSFKAASARLTAVGRLPVLQWVKTESLSGFL
ACCLNKLKPKFPIALFETTSSSSISSLASIYALKMDLASVAVAKAFAITCLSFKAASARLTAVG
RLPVLQWVKTESLSGFLACCLNKLKPKFPIALFETTSSSSISSLASIYALKMDLASVAVAKAFA
ITCLSFKAASARLTAVGR(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Zhang et al., 2019