Detail information of EPlOSAG00000036674_circ_ig.1


General Information
CircRNA Name EPlOSAG00000036674_circ_ig.1
ID in PlantcircBase osa_circ_008053
Alias NA
Organism Oryza sativa
Position chr10: 22478777-22478971  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0567200_circ_ag.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CC-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGCATCTGATACTTTCCCACGCTTGCAAAATGCGCACCCCTCCTGTATGTAAAAATTATGC
ATCTGATACTTTCCCACGCTTGCAAAATGCGCAgtatgctccaaattctcaactatatcgatgg
taccatgtgcattttatccatctgcaatatcctttgctctggttgcccagatgaaagtatgtaa
aaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGCTCCAAATTCTCAACTATATCGATGGTACCATGTGCATTTTATCCATCTGCAATATCCT
TTGCTCTGGTTGCCCAGATGAAAGTATGTAAAAATTATGCATCTGATACTTTCCCACGCTTGCA
AAATGCGCACCCCTCCTGTATGTAAAAATTATGCATCTGATACTTTCCCACGCTTGCAAAATGC
GCA
Conservation Information
Conserved circRNAs NA
PMCS 0.226854444
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017