Plant Circular RNA Database

Detail information of AT3G14100_circ_g.3

			
						 General Information
					
						CircRNA Name
						AT3G14100_circ_g.3
					
						ID in PlantcircBase
						ath_circ_021627
					
						Alias
						3:4673674-4675699
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 4673674-4675699  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT3G14100						
					
						Parent gene annotation
						
							Oligouridylate-binding protein 1C
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT3G13990_circ_g.1 AT3G13990_circ_g.2 3_circ_ag.3 AT3G13990_circ_g.4 AT3G13990_circ_g.5 AT3G13990_circ_g.6 AT3G13990_circ_g.7 AT3G14000_circ_g.1 AT3G14000_circ_g.2 AT3G14010_circ_g.1 AT3G14010_circ_g.2 AT3G14010_circ_g.3 AT3G14010_circ_g.4 AT3G14010_circ_g.5 AT3G14010_circ_g.6 AT3G14010_circ_g.7 AT3G14010_circ_g.8 AT3G14020_circ_g.1 AT3G14020_circ_g.2 AT3G14067_circ_g.1 AT3G14075_circ_g.1 AT3G14075_circ_g.2 AT3G14080_circ_g.1 AT3G14080_circ_g.2 AT3G14080_circ_g.3 AT3G14100_circ_g.1 AT3G14100_circ_g.2 AT3G14100_circ_g.4 AT3G14100_circ_g.5 AT3G14100_circ_g.6 AT3G14100_circ_g.7 AT3G14100_circ_g.8 AT3G14100_circ_g.9 AT3G14110_circ_g.1 AT3G14120_circ_g.1 AT3G14120_circ_g.2 AT3G14120_circ_g.3 3_circ_ag.4 AT3G14130_circ_g.1 AT3G14130_circ_g.2 AT3G14130_circ_g.3 AT3G14130_circ_g.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G14150_circ_g.1 AT3G14172_circ_g.1 AT3G14172_circ_g.2 						
					
						Support reads
						1/1
					
						Tissues
						seedling;root
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT3G14100.1:10

General Information
CircRNA Name	AT3G14100_circ_g.3
ID in PlantcircBase	ath_circ_021627
Alias	3:4673674-4675699
Organism	Arabidpsis thaliana
Position	chr3: 4673674-4675699 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT3G14100
Parent gene annotation	Oligouridylate-binding protein 1C
Parent gene strand	+
Alternative splicing	AT3G13990_circ_g.1 AT3G13990_circ_g.2 3_circ_ag.3 AT3G13990_circ_g.4 AT3G13990_circ_g.5 AT3G13990_circ_g.6 AT3G13990_circ_g.7 AT3G14000_circ_g.1 AT3G14000_circ_g.2 AT3G14010_circ_g.1 AT3G14010_circ_g.2 AT3G14010_circ_g.3 AT3G14010_circ_g.4 AT3G14010_circ_g.5 AT3G14010_circ_g.6 AT3G14010_circ_g.7 AT3G14010_circ_g.8 AT3G14020_circ_g.1 AT3G14020_circ_g.2 AT3G14067_circ_g.1 AT3G14075_circ_g.1 AT3G14075_circ_g.2 AT3G14080_circ_g.1 AT3G14080_circ_g.2 AT3G14080_circ_g.3 AT3G14100_circ_g.1 AT3G14100_circ_g.2 AT3G14100_circ_g.4 AT3G14100_circ_g.5 AT3G14100_circ_g.6 AT3G14100_circ_g.7 AT3G14100_circ_g.8 AT3G14100_circ_g.9 AT3G14110_circ_g.1 AT3G14120_circ_g.1 AT3G14120_circ_g.2 AT3G14120_circ_g.3 3_circ_ag.4 AT3G14130_circ_g.1 AT3G14130_circ_g.2 AT3G14130_circ_g.3 AT3G14130_circ_g.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G14150_circ_g.1 AT3G14172_circ_g.1 AT3G14172_circ_g.2
Support reads	1/1
Tissues	seedling;root
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT3G14100.1:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTGCTCCCAAAAGTTACTTCATCTGAAACTTAGCATGCAATCTGACATTTGTTATCATGTTAAT
TGTAGTGCTCATGGGGAAACAAGCCAACTCCACCAGgtatgttggaaacatccatacacaggtc
acagagcctttgcttcaagagatttttacaagcactggccctgttgaaagcagtaaactcatca
gaaaggat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACT
GGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGATAAGGTAGTTAGATTCTAAAATCCACCTG
ATTTCTACTTTATTGTGAAAGTGACCCTCTTATATAGTAGCTTTCTTGTTTTGGACGAGCATAC
CTCAACAATTGCACATTTTTAATACTTTAAGGAAACTACTCTACTTGCTGCTTACTAAAAATGG
ACTCATAAAGCATGCATCTTTTTATTTATTTGCAGTCATCATATGGATTTGTTCACTACTTTGA
TCGAAGATCCGCTGCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTAAGGAACAATTTTC
ATAGTTTCCTTCCTCTCCTCTTCTTATCGTTCGAATGCTTTTGTTTAGGTTATAATCGTCGAGT
TTACAGGTTTGGACAGCCTATCAAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACA
TCAAGTAAGTTTTGACTTTTTTTAAGTGTTGCATTTTGTTTGTATGTTTTTGAGGATACTCAAT
GTTTTAGTTTCCATGAGTTGCAGGTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTC
ACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCGTAAGTTCTGTTGCTTG
ATCAGCTCCTTTTAACTAACTTATTCTACTTGGTTGTAAAACAAATATCATAATCTCTGACTGT
GTCTAATATTTTGAAGGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGCTT
TGGGTTTGTTTCCTTCCGCAATCAACAGGTAATGTACATTCTTTAAATCATGCAGTGAGTTTTT
GTTTTAGCTCAAGGATTGTTCGTGGTTTACATTAATGTTAAATGTTGATTTCATTTGCAGGATG
CTCAAACTGCCATTAATGAGATGAATGGTAAGGATTATATAGTAGCTGAGATCTCAGTACTTCG
TTCTCATGCTTTCTTGTTCTGAAGTGCTTAGAATTTGCATGCAACTGAATGATACTGTGCCTAG
AAAGACCTGCTGAAAGTTTTCTTGATTTGTTAGTCAAGAGCTGCTGAAAGTTGCATAACTTCTG
TTTCAGTGTCATCTAAAATTGAGGTTTTCTCTTTATTCTTAGCAATTAATCTTTGTTTCTATCA
CATCTTCTCAGGTAAGTGGTTAAGTAGCAGACAAATCAGATGCAACTGGGCCACGAAGGGCGCT
ACTTCTGGTGATGATAAGCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCAT
CAGGTTGTCTTTCTATTACTGTGCAAATTCTTATGTTTTTTTCTCCTTCTCCTCAAATGGAATT
TACGAACCTACATTGATTTTCCCTGAGTAATATGAAAAACTTTAAGTTAACAAAGCCATATTGG
TCGTTTGATTGTGCAGAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTC
AGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGGTACATTATCCACTAGGAAGTGCTCC
TTGTAATACTATCACAACAAAAACAGTTTATTTGAGGTTCTTTGATGAAGTTTTACATTAGTAG
ATTTCGGGTACATCGTTACAGCTATCTATCTTGCAGGTAACTCAGCTTGATCTACACCGTTACT
TCCATGCTCTTGGCGCTGGAGTTATTGAGGAGGTCCGTGTCCAACGAGACAAAGGCTTTGGTTT
CGTGAGATATAACACTCATCCCGAAGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCTTAC
CTCTTTAACAGACAGATAAAGGTACTTTTAAGTTTGGCTTACCACTCTAAACCCTCTCTATTTG
ATCTTACTGCTCCCAAAAGTTACTTCATCTGAAACTTAGCATGCAATCTGACATTTGTTATCAT
GTTAATTGTAGTGCTCATGGGGAAACAAGCCAACTCCACCAG
						
					

			
		

Sequences
Splice junction sequence	CTGCTCCCAAAAGTTACTTCATCTGAAACTTAGCATGCAATCTGACATTTGTTATCATGTTAAT TGTAGTGCTCATGGGGAAACAAGCCAACTCCACCAGgtatgttggaaacatccatacacaggtc acagagcctttgcttcaagagatttttacaagcactggccctgttgaaagcagtaaactcatca gaaaggat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACT GGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGATAAGGTAGTTAGATTCTAAAATCCACCTG ATTTCTACTTTATTGTGAAAGTGACCCTCTTATATAGTAGCTTTCTTGTTTTGGACGAGCATAC CTCAACAATTGCACATTTTTAATACTTTAAGGAAACTACTCTACTTGCTGCTTACTAAAAATGG ACTCATAAAGCATGCATCTTTTTATTTATTTGCAGTCATCATATGGATTTGTTCACTACTTTGA TCGAAGATCCGCTGCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTAAGGAACAATTTTC ATAGTTTCCTTCCTCTCCTCTTCTTATCGTTCGAATGCTTTTGTTTAGGTTATAATCGTCGAGT TTACAGGTTTGGACAGCCTATCAAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACA TCAAGTAAGTTTTGACTTTTTTTAAGTGTTGCATTTTGTTTGTATGTTTTTGAGGATACTCAAT GTTTTAGTTTCCATGAGTTGCAGGTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTC ACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCGTAAGTTCTGTTGCTTG ATCAGCTCCTTTTAACTAACTTATTCTACTTGGTTGTAAAACAAATATCATAATCTCTGACTGT GTCTAATATTTTGAAGGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGCTT TGGGTTTGTTTCCTTCCGCAATCAACAGGTAATGTACATTCTTTAAATCATGCAGTGAGTTTTT GTTTTAGCTCAAGGATTGTTCGTGGTTTACATTAATGTTAAATGTTGATTTCATTTGCAGGATG CTCAAACTGCCATTAATGAGATGAATGGTAAGGATTATATAGTAGCTGAGATCTCAGTACTTCG TTCTCATGCTTTCTTGTTCTGAAGTGCTTAGAATTTGCATGCAACTGAATGATACTGTGCCTAG AAAGACCTGCTGAAAGTTTTCTTGATTTGTTAGTCAAGAGCTGCTGAAAGTTGCATAACTTCTG TTTCAGTGTCATCTAAAATTGAGGTTTTCTCTTTATTCTTAGCAATTAATCTTTGTTTCTATCA CATCTTCTCAGGTAAGTGGTTAAGTAGCAGACAAATCAGATGCAACTGGGCCACGAAGGGCGCT ACTTCTGGTGATGATAAGCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCAT CAGGTTGTCTTTCTATTACTGTGCAAATTCTTATGTTTTTTTCTCCTTCTCCTCAAATGGAATT TACGAACCTACATTGATTTTCCCTGAGTAATATGAAAAACTTTAAGTTAACAAAGCCATATTGG TCGTTTGATTGTGCAGAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTC AGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGGTACATTATCCACTAGGAAGTGCTCC TTGTAATACTATCACAACAAAAACAGTTTATTTGAGGTTCTTTGATGAAGTTTTACATTAGTAG ATTTCGGGTACATCGTTACAGCTATCTATCTTGCAGGTAACTCAGCTTGATCTACACCGTTACT TCCATGCTCTTGGCGCTGGAGTTATTGAGGAGGTCCGTGTCCAACGAGACAAAGGCTTTGGTTT CGTGAGATATAACACTCATCCCGAAGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCTTAC CTCTTTAACAGACAGATAAAGGTACTTTTAAGTTTGGCTTACCACTCTAAACCCTCTCTATTTG ATCTTACTGCTCCCAAAAGTTACTTCATCTGAAACTTAGCATGCAATCTGACATTTGTTATCAT GTTAATTGTAGTGCTCATGGGGAAACAAGCCAACTCCACCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.126503303

Conservation Information
Conserved circRNAs	NA
PMCS	0.126503303

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR5021 ath-miR830-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR5021 ath-miR830-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT3G14100_circ_g.3

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