Detail information of 3_circ_ag.7


General Information
CircRNA Name 3_circ_ag.7
ID in PlantcircBase ath_circ_021645
Alias NA
Organism Arabidpsis thaliana
Position chr3: 4690396-4695166  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G13990_circ_g.1 AT3G13990_circ_g.2 3_circ_ag.3 AT3G13990_circ_g.4 AT3G13990_circ_g.5 AT3G13990_circ_g.6 AT3G13990_circ_g.7 AT3G14000_circ_g.1 AT3G14000_circ_g.2 AT3G14010_circ_g.1 AT3G14010_circ_g.2 AT3G14010_circ_g.3 AT3G14010_circ_g.4 AT3G14010_circ_g.5 AT3G14010_circ_g.6 AT3G14010_circ_g.7 AT3G14010_circ_g.8 AT3G14020_circ_g.1 AT3G14020_circ_g.2 AT3G14067_circ_g.1 AT3G14075_circ_g.1 AT3G14075_circ_g.2 AT3G14080_circ_g.1 AT3G14080_circ_g.2 AT3G14080_circ_g.3 AT3G14100_circ_g.1 AT3G14100_circ_g.2 AT3G14100_circ_g.3 AT3G14100_circ_g.4 AT3G14100_circ_g.5 AT3G14100_circ_g.6 AT3G14100_circ_g.7 AT3G14100_circ_g.8 AT3G14100_circ_g.9 AT3G14110_circ_g.1 AT3G14120_circ_g.1 AT3G14120_circ_g.2 AT3G14120_circ_g.3 3_circ_ag.4 AT3G14130_circ_g.1 AT3G14130_circ_g.2 AT3G14130_circ_g.3 AT3G14130_circ_g.4 3_circ_ag.5 3_circ_ag.6 AT3G14150_circ_g.1 AT3G14172_circ_g.1 AT3G14172_circ_g.2
Support reads 12
Tissues root, aerial, inflorescences, whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTCGGTGGAAGATCAAGAAAAGTCTTCCATGGCGTCAGATCAATTCGTAAGGATACTGCCC
CCAAGGCTCTTCTTCAGGAAACAAGTCTCCGACCAGgtcgtctgaatttaacttttaggcagta
ctagagataggatcaaactcatgattgatgctgcagctctttcctttatatttatattttatgc
actaacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGTCTGAATTTAACTTTTAGGCAGTACTAGAGATAGGATCAAACTCATGATTGATGCTGCAG
CTCTTTCCTTTATATTTATATTTTATGCACTAACCACATCATTGTGTCAGACAAGCATTCAATA
TGTTTATCATATGTACTTTTCAAAAGATGAGTGTTGAATTGAATCCATGCTTCAGTCCTTGTTC
TTCTAACATGGCTGCTGGTTGCCACGGTTCTTCAGCTGTCTGATTAAGTTTCTCAGACCATATC
TGTTGGTTTTTTGGATCAGAGCATAGAGTGAAGTCTCTCATTCTCTGTCCTAACATGGTTTCTG
GTTATGTCATCAATGGTTGGACAACCAGAAAGAGCCATAGTAATCTCAAACTCATTCTTTAACA
TATCAATCACTTTTTTCACTCCATCTTCACCCTTAGCTGCAAGCCCATAGATTATAGGCCTCCC
TATCTGCATCAGCCAACCAGAAAGTGTCATAATACCAACAGAGAGCAACCTGAAAATTGTATGC
TAGATAGCATTGAAAGCTTACAAGAACAGCTTGTGCTCCAAGTGCCAGGGCTTTGAAAACATCT
GTCCCTCGTCTTACTCCTCCATCAAGCAAAACCGGAATCCTACCTCTAACAACTTGAACAACCT
GTAGTAGTGTAGTACCATAAGAAGACTTGTTTGTTCATTGAGAAGAATAAGCTTGTTTAAAAGC
AAGCTTTGATTGGTTTACCTCTTCTAAAACAGTTATTGTAGCAGGGGAATAGTCGAGCTGGCGA
CCCCCATGGTTAGATACAATTATTCCATCTACACCAGCTTCAACAGCCTTAAGAGCTGCATTGA
GAAAAGTCTCTTATATGCCTTGAAGTTTCAAGATTGTTTGATACGGGCAATATATATCATGAGT
ATGAGACAAGAATCACACCGTCTTCTCGGGTGAGTATCCCTTTGACCAGAATAGGTAACTCTGT
AATAGATCTTAACCATTCAATGTCCTAAAATTTTGCAGTGAAAATGTTATAAGAATTTCCCTCA
CATTGTCATGGCTCATGGGAACTTTTTGTTAAGTAATCAAGGAATAAAGATTGATTTCAGTATT
TCACCTTCCAGCTAAATGAAGCATCAAATGCACGAGAGGCGAAGGCTTGTACCCCTGAACCTTT
ACTCTGAAAAAAGTTATCACGTCAACAACTGGTAAGGTTTCACTTTTACATGAACCTTAATTCA
AGCTCTACTTACAGGTCGGACTTCGGTTGAAAATAAACCTTCGAAATTCTTCAGCTGCGGGGAT
ATCATTCTATAGAATAAAAATGAAACTTCATTTCATAAACTACATTTTATAAGATAGGGAAGCT
TATTCCTGCAAGATATAAGTTCCCAAAAACTCAGAGTAATGGAGAGTGTTACTTGTTCTTTATA
TCAGCTTCCCTTCTACCAAGTCTAGGAACATCAACAGTCAGAACTATGGCCTTAAACCCAGCTT
TCTCAGCTCTTTTCACCACCTGAGCAGTTATGTCCCGTCTCTTGTACACCTATAAAAGATATCA
GAGCGAATTAAGAACCGAGGCCTAAATCCTACAATAAGGAAGTACAATTTAAGGATAAGTAAAG
CAGGTGTAAATTAAAGACTGTGTAACTTACATATATTTGAAGAAACCGAACAGCGTTACAACTG
GAAGCAATCTCCTCAAAAGTGCATGAAGACATGTATGATACTATCTGAAATTCACAGAACAATT
AAAAAGAAACTCTATTCATCACCTTAAAACCAAAAAAGTGTACAAAACATGTATTACACTAAAC
AACCCCTTAGTACCATGATAGTATTACACGCAGCTGCAGCTTTCGCAGTAGCGGTTTCTCCTAA
CATAAAAGACAATCAAACTAATCTTCTGAATCCAACAACTGCATACCGTTAACAGAATTTATGA
AGATAGACTAGATAAACCTTCAGGATGAGCCAACTTATGATTTCCTGTTGGAGCAATCATGATT
GGAGCAGAGATAGGGTAACCCAATATTTTGGTAGACATATCTATTTTGCTCACATCAACGAGAA
CCCTCGGCCTAAACCTGAAAATCAAGCACATGTAAAAGAGGAAATCACAACAAGGTTATAGTGT
TACCAAAAAGGCAATGGATATGGACTAGTTACATGATTCTACGGAAAGCTTGGACATTTTCATT
GAGAGTGTGTTGATCCTCTGCTCCTCCATTGTAGAAATCATAGTACATCTTAGGGAGGGCTTGT
TTAGCCAGCTCTTGAAACTCATCCACATTAACGATTTGATCCATCTAATCTATCTACAGTATCA
CACATAAAGGAAAGAAATTACGAATCAAACAACATTACTAGCTCTACCAGAAACTAAAACAGAA
ATCTTTCAGGGGCGTTGATTCGCCAACTTTACTAATTTGCCTGTAATAGTGAGTTTTTAAATTA
CAAAAATAAATATATTGGCTGCGGTCACTACTAAGAGGCTCAGAACAAAAAGAAGTAAAAACAC
TCACTACATAAGAGTTGATCGTAGAAGTTACTCACTTACCTGAAGAAGCCAGCAGAAGAAAACC
AGAAGCAGAACCAAGAATGTCAGGCTAACTTTTTCAAGTCTCTAGTAAATGAAACCGAATAAGA
TAAGGGAAGTCAAACACTGTCTGTCGGGGAAATAATTCTTGATCTTGATCTTTACGGGCCCGGT
CGATGACAAAATACGACGAAATCTACTCTTGTCGCTTTTGTAAGATGTAAATATGTAATGACAC
AGTACTACTCTACTAACTCGCCTAGCCTGTCGTTACAGAAAAGGATTTCAGCCCATGGGCTTTA
CTATGATAAATTCATCAGCCCAAAATAATTCGGACACATCTGAACCACGTGTCAGCTTATACAA
CGATGACATGGCATGCTGAGTCAGCACCGCCAAAGATGGTGCACGACGACCGGAGAGTTTTTAC
TAACTTGTACACGAAATTGGGTCAGAAACCCAAGAGTCTCTCTTGCACAAAAAACTGTCTGTAA
AAGGGAGTGGGCATCATCGTTGACGCTTCAGTTGTAGTACTTTAACCTGCTAAAGTTACAGTCT
TTTCAAAAGAGCCTGCGAGTGAAATCGATGAATCACAGCGAAGCTAGGGGTTCCGGTGGCCATA
AGGGTTATCGGGGACGTTCTCAAGCATCTGAGCAATGGGTTCCGGTACTTATACTTGATTGTCG
TCTCGTATTCTTGTGTTAATTCATTTCTGTTTTTGAAATTGGAGTCCCTGGATTAGCCCTTTAC
TTGTTGCGCGCTATTGGTATGGTTGATAAGCTGATTGTTTCCTTTGTAATGTATACAGGTTGCA
GCTGATGATAAGTCTTTGGAAGATTCTTCTGGTAATAGGGTTAGGGGATCTCAAGGGAAAGGAA
GAAGTAGAACATCGTGGTCTCCTAGAAATAGTTATGGGCGTGGTAACGATGAACACAGTCCAGT
GCAAGCGTACGTTAACAAGTCCAATGTGGGATTTGTGGAAAAGGGAGTTCAACAGGATAGAAAG
TCCCTAGAGGATGGAATTGGTTCTACTAAGCAACCTGATGATGGTGCTGCTGCTGGAGATAACA
AGGCTGTTTTGCAATCAAAGAGCACAAATGTCAGTGGAGGTTCGTTTGTCTCTAGTGAATGTGA
GGACAAGGATGGCGCTAAAATGTATTGTGATCTTGTGAATAGGGTGAATGATGTTACGTTGTCT
TGCCAGGAGTCTGTGTCTTCTACAGTTGTTCAGAAGGTTGAGCTTTCTAGTGTTGAGGATCAAA
AGAGTGCTCCAAAGGCTGATGGGGCAGGGAACTCTTCAAATGAAAGCAGTACGAGACATTTTGA
TATCTTTCTCGAGAAGAAGGGGATAGTACTCAAGCCCAACCTTCTGGTTCTGAGCAGAGAAAAG
AAGAAAGCAGCTAAAGGGTACAGTGGAACTGTTATTAGACCTGGAATGGTACTTCTCAAGAACT
ACTTGTCAATCAATGATCAAGTAATTACTCTCTATCTCTCTATCTCTCCCCTGTTTCCCTCTTT
ATGCGTGTGTTTGCCTTTGTATCTGAACTTATTTGTATCATTGTGCTTCTTTTTTTCTTCAAAT
TGTGTGTAGGTAATGATTGTGAACAAATGCCGTCGGCTGGGTTTGGGTGAAGGTGGCTTCTATC
AACCAGGTTACAGGGATGAAGCAAAATTGCATTTGAAAATGATGTGCCTTGGCAAAAACTGGGA
CCCTGAAACATCTCGATATGGAGAAACTCGACCATTTGATGGTTCTACTGCGCCAAGAATTCCT
GCTGAATTCAATCAGTTTGTTGAGAAAGCAGTTAAAGAATCACAGTCCCTAGCGGCCTCAAATT
CAAAGCAGACAAAGGGAGGAGATGAAATACCATTTATGTTACCTGACATCTGTATTGTTAACTT
CTACTCATCCACCGGGAGACTTGGTCTCCATCAGGTCAGTATTTCAAACAACTTCTTGATATCA
TGAAGCTCAAAGGTTGTATCATGAGTTTCAAATCCTTGATGTTTCAGGACAAAGATGAGAGCGA
AAATTCCATCCGGAAGGGATTACCTGTTGTTTCATTTTCTATTGGAGATTCAGCCGAGTTCTTG
TATGGTGATCAGAGGGATGAAGACAAGGCAGAAACGTTAACCTTGGAGTCTGGAGATGTTCTAT
TATTCGGTGGAAGATCAAGAAAAGTCTTCCATGGCGTCAGATCAATTCGTAAGGATACTGCCCC
CAAGGCTCTTCTTCAGGAAACAAGTCTCCGACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.17281979
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017