Detail information of 3_circ_ag.6


General Information
CircRNA Name 3_circ_ag.6
ID in PlantcircBase ath_circ_021644
Alias NA
Organism Arabidpsis thaliana
Position chr3: 4687713-4692457  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G13990_circ_g.1 AT3G13990_circ_g.2 3_circ_ag.3 AT3G13990_circ_g.4 AT3G13990_circ_g.5 AT3G13990_circ_g.6 AT3G13990_circ_g.7 AT3G14000_circ_g.1 AT3G14000_circ_g.2 AT3G14010_circ_g.1 AT3G14010_circ_g.2 AT3G14010_circ_g.3 AT3G14010_circ_g.4 AT3G14010_circ_g.5 AT3G14010_circ_g.6 AT3G14010_circ_g.7 AT3G14010_circ_g.8 AT3G14020_circ_g.1 AT3G14020_circ_g.2 AT3G14067_circ_g.1 AT3G14075_circ_g.1 AT3G14075_circ_g.2 AT3G14080_circ_g.1 AT3G14080_circ_g.2 AT3G14080_circ_g.3 AT3G14100_circ_g.1 AT3G14100_circ_g.2 AT3G14100_circ_g.3 AT3G14100_circ_g.4 AT3G14100_circ_g.5 AT3G14100_circ_g.6 AT3G14100_circ_g.7 AT3G14100_circ_g.8 AT3G14100_circ_g.9 AT3G14110_circ_g.1 AT3G14120_circ_g.1 AT3G14120_circ_g.2 AT3G14120_circ_g.3 3_circ_ag.4 AT3G14130_circ_g.1 AT3G14130_circ_g.2 AT3G14130_circ_g.3 AT3G14130_circ_g.4 3_circ_ag.5 3_circ_ag.7 AT3G14150_circ_g.1 AT3G14172_circ_g.1 AT3G14172_circ_g.2
Support reads 19
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTGTTGGAGCAATCATGATTGGAGCAGAGATAGGGTAACCCAATATTTTGGTAGACATATCT
ATTTTGCTCACATCAACGAGAACCCTCGGCCTAAACatgattctacggaaagcttggacatttt
cattgagagtgtgttgatcctctgctcctccattgtagaaatcatagtacatcttagggagggc
ctgtttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGATTCTACGGAAAGCTTGGACATTTTCATTGAGAGTGTGTTGATCCTCTGCTCCTCCATTGT
AGAAATCATAGTACATCTTAGGGAGGGCCTGTTTGGCCAGCTCTTGAAACTCATCCACGTTAAC
GATTTGATCCATTTATCTACAATTTCATATAAAGGAAAGAAATTTAGAATCAAAGAACACACTG
CTTTAATAATCAACCATGCAAGAATCTTGCTCCTCTTGTCCTCTATCAAGATTAAACATCTTTA
AAAGAGACCTTATCATCAAACTAATTATCCACTACCGGACTTAATTCGTCTATGTTACTGATTT
GTTTGAATTAGTATGTTCAAATCTTAATGTTACAGGAAACGACAAAAAATAGATGTATTGGCTG
CGATCATTAAGGGACTCAGAACTAAAACCATTGTAGAAGTAGAAGTTGATTTTAGAAGTACTTA
CATATCTGAAAGAACCCAGTAAAAGATACAGAAACCAGTTTAAGTCTCTGGTAAACAAAGAAAT
TAGATATCTTTTAGCTTTATGAAATCTGGAAATGACAGGGAAAAAAGAACACGAGAACAGAGTC
GGTCCTGTCGGAGACCAAGACAGAAAACGACAAAACACCTGCTAACCCTCTAAGTCGTCTAGAG
TCTTTGCCCACAGTAAACGTTGACTATTCAACTCAATGAGGACGTGGCGTACCGAGTCATCATC
ATTTCAGAGAGCCATTTTCCAACGGGAGCTTTTATTTCTTCTCTTCTGACACCAATGCTCAGTC
TCAGAGACCGAAGCGTTTCTTGAAAAGTTGCAAATTTTTACCTCAGAACATATATGTCTATAAA
AATGGCAACGACCAATTACTCAATGGTCATGCCTATGTTCCGCGACGAATCACGGGGAAGCCTC
TAATGTGTATCGTCGTCGTCAGAGAATAGAAAGCCCGGTAGTTATATTATATAATGTCATCTTT
TTTAAGTGTTTTTGTGTGTTTTTAAACCCTTTTTTTGAATCCTTTGATTATTCTTACCTTTGTA
ACTTTGTTGCGTGCTAATGTTATGGTGGTGATTAGATCTTCATTGGTAATTTACAAGTTGCAGT
TGATAGGTCTTCTTTGTATGAATCTTCTGATTACAGTTCATTTGTCGCTAGAGAATGTTTGAAC
AAGGATAGTGCTATGAAGCCTTACGACATATTGTGGAACTGAGGAGTTTGATAAATTTCTCGTT
GTCTTGCCAGGAGCATGTGTCTTACAGCATTTTTGAGAAGGATGAGCATTTTAGTGTTGAAGAT
CATTATACTGCAGGAAACTCTTCAAATGAAAGCAACACGAGACCTTCTGACATCTTCCTCAAGA
AGAAGCTGGTGGGACTAAACCCCTCCATTCTGCAACTAAACAGAGAAAAGAGGAAAGCAACTTT
GAAGTTTTCTGGAGATAACAAGGATATTTTACAATCTACTTTGTCTAGCTCAAAGAACATAAAT
CTTAGTGGTGGTTTGTTTGTCTCTAGAGAATATGAGAACAAGTATGTGAAGTTTGGCGCTAGAA
TGCGTTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGGCTTGGCATGAGTCTGTGTCTTC
TACAAGTGATAAAAATGTTGAGCTTTCTAGTGTTGAGAATCATAAGATAGCTCCAAAGGCTGAT
GGGCCAGGGAACTCTTCAAATGAAAGCTCCTCAAGTCCTTTTGATATCTTCCTCAAGAAGAAGG
TGATGAGACTAAAACCCTCCTTTCTGGAACTGAACAGAGAAAAAAAGAAAGCAGCTAAGGGTTT
CAGTGGAATTGTTATTAGACCTGGAATGGTACTTCTCAAGAACTACTTGTCAATCAATAATCAA
GTAAGTACTCTCTCTCACTATTTCTGTGTTTATGTGTTTATCTGATCTTATATGCATCATTTGA
GCTTTCTCTGTTTCTTAAAAATGCTTGTAGGTGATGATTGTGAACAAATGTCGTCAACTTGGTT
TGGGTGAAGGAGGCTTCTATCAACCTGGTTTTCAAGATGGCGGGTTGTTGCATTTGAAAATGAT
GTGCCTTGGCAAAAACTGGGACTGTCAAACGCGTCGATATGGAGAGATTCGACCAATTGATGGT
TCTGTTCCGCCTCGAATTCCCGTTGAATTCAGTCAGCTTGTTGAGAAAGCAATTAAAGAATCAA
AGTCCCTAGTTGCTACAAATTCAAATGAGACAAAGGGAGGAGATGAAATACCACTTTTGTTGCC
TGACATATGTGTTGTTAACTTCTACACATCCACCGGGAAACTTGGTCTCCATCAGGTTAGTGTT
TACGACAAAACAAGTTTTGATTTCTTAAAGTATAAAGGTGGTTACCTCAATACAGTATCGTAAG
AATTGCTCTTCATTGTATTATTGTTCTTTTAAGTTTCTGCATCATCAACTTATTGAATCCTTCA
TGGCTCAGGACAAAGGGGAGAGCAAAAAGTCCCTCCGGAAAGGATTGCCTATTGTATCATTTTC
TATTGGAGATTCAGCCGAATTCTTGTATGGTGATCAGAAGGATGTTGACAAGGCAGACACGTTA
ATCTTGGAGTCTGGAGATGTTCTAATATTCGGTGAAAGATCAAGAAATGTCTTCCATGGCGTCA
GATCAATTCGTAAGATACTGCCCCCAAGGCTCTTCTTCAGGAAACAAATCTTCAACCAGGTCGT
CTGAATTTAACTTTTAGGCAGTACTAGAGATAGGATCAAACTCATGATTGATGCTGCAGCTCTT
TCCTTTATATTTATATTTTATGCACTAACCACATCATTGTGTCAGACAAGCATTCAATATGTTT
ATCATATGTACTTTTCAAAAGATGAGTGTTGAATTGAATCCATGCTTCAGTCCTTGTTCTTCTA
ACATGGCTGCTGGTTGCCACGGTTCTTCAGCTGTCTGATTAAGTTTCTCAGACCATATCTGTTG
GTTTTTTGGATCAGAGCATAGAGTGAAGTCTCTCATTCTCTGTCCTAACATGGTTTCTGGTTAT
GTCATCAATGGTTGGACAACCAGAAAGAGCCATAGTAATCTCAAACTCATTCTTTAACATATCA
ATCACTTTTTTCACTCCATCTTCACCCTTAGCTGCAAGCCCATAGATTATAGGCCTCCCTATCT
GCATCAGCCAACCAGAAAGTGTCATAATACCAACAGAGAGCAACCTGAAAATTGTATGCTAGAT
AGCATTGAAAGCTTACAAGAACAGCTTGTGCTCCAAGTGCCAGGGCTTTGAAAACATCTGTCCC
TCGTCTTACTCCTCCATCAAGCAAAACCGGAATCCTACCTCTAACAACTTGAACAACCTGTAGT
AGTGTAGTACCATAAGAAGACTTGTTTGTTCATTGAGAAGAATAAGCTTGTTTAAAAGCAAGCT
TTGATTGGTTTACCTCTTCTAAAACAGTTATTGTAGCAGGGGAATAGTCGAGCTGGCGACCCCC
ATGGTTAGATACAATTATTCCATCTACACCAGCTTCAACAGCCTTAAGAGCTGCATTGAGAAAA
GTCTCTTATATGCCTTGAAGTTTCAAGATTGTTTGATACGGGCAATATATATCATGAGTATGAG
ACAAGAATCACACCGTCTTCTCGGGTGAGTATCCCTTTGACCAGAATAGGTAACTCTGTAATAG
ATCTTAACCATTCAATGTCCTAAAATTTTGCAGTGAAAATGTTATAAGAATTTCCCTCACATTG
TCATGGCTCATGGGAACTTTTTGTTAAGTAATCAAGGAATAAAGATTGATTTCAGTATTTCACC
TTCCAGCTAAATGAAGCATCAAATGCACGAGAGGCGAAGGCTTGTACCCCTGAACCTTTACTCT
GAAAAAAGTTATCACGTCAACAACTGGTAAGGTTTCACTTTTACATGAACCTTAATTCAAGCTC
TACTTACAGGTCGGACTTCGGTTGAAAATAAACCTTCGAAATTCTTCAGCTGCGGGGATATCAT
TCTATAGAATAAAAATGAAACTTCATTTCATAAACTACATTTTATAAGATAGGGAAGCTTATTC
CTGCAAGATATAAGTTCCCAAAAACTCAGAGTAATGGAGAGTGTTACTTGTTCTTTATATCAGC
TTCCCTTCTACCAAGTCTAGGAACATCAACAGTCAGAACTATGGCCTTAAACCCAGCTTTCTCA
GCTCTTTTCACCACCTGAGCAGTTATGTCCCGTCTCTTGTACACCTATAAAAGATATCAGAGCG
AATTAAGAACCGAGGCCTAAATCCTACAATAAGGAAGTACAATTTAAGGATAAGTAAAGCAGGT
GTAAATTAAAGACTGTGTAACTTACATATATTTGAAGAAACCGAACAGCGTTACAACTGGAAGC
AATCTCCTCAAAAGTGCATGAAGACATGTATGATACTATCTGAAATTCACAGAACAATTAAAAA
GAAACTCTATTCATCACCTTAAAACCAAAAAAGTGTACAAAACATGTATTACACTAAACAACCC
CTTAGTACCATGATAGTATTACACGCAGCTGCAGCTTTCGCAGTAGCGGTTTCTCCTAACATAA
AAGACAATCAAACTAATCTTCTGAATCCAACAACTGCATACCGTTAACAGAATTTATGAAGATA
GACTAGATAAACCTTCAGGATGAGCCAACTTATGATTTCCTGTTGGAGCAATCATGATTGGAGC
AGAGATAGGGTAACCCAATATTTTGGTAGACATATCTATTTTGCTCACATCAACGAGAACCCTC
GGCCTAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.728244048
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017