Detail information of Os11g0707000_circ_ag.2


General Information
CircRNA Name Os11g0707000_circ_ag.2
ID in PlantcircBase osa_circ_010230
Alias Os_ciR664
Organism Oryza sativa
Position chr11: 28935231-28938784  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 Os11g0707000_circ_g.15 Os11g0707000_circ_g.16 Os11g0707000_circ_g.17 Os11g0707000_circ_g.18 Os11g0707000_circ_g.19 Os11g0707000_circ_g.20 Os11g0707000_circ_g.21 Os11g0707000_circ_g.22 Os11g0707000_circ_g.23 Os11g0707000_circ_g.24 Os11g0707000_circ_g.25 Os11g0707000_circ_g.26 Os11g0707000_circ_g.27 Os11g0707000_circ_g.28 Os11g0707000_circ_g.29 Os11g0707000_circ_ag.1 Os11g0707000_circ_ag.3 Os11g0707000_circ_g.4 Os11g0707000_circ_g.5 Os11g0707000_circ_g.6 Os11g0707000_circ_ag.7 Os11g0707000_circ_ag.8 Os11g0707000_circ_g.9 Os11g0707000_circ_g.10 Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14
Support reads 51/224
Tissues root/shoot, anther, seed, pistil
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACAGCACGCACATCTTCCCCTTGTTGATCATGTCCGCCGCCTCGCGGTACCGCTGCCGGATC
AGCTTCGCGGGCTCTCCGGCGCTCATCATGATGAGGttgatccccatcttggcgaagacgagct
cacactggaaggattttccctgacccttgcctccccagatacccaggatgagtgggaccttgat
gttgggga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 352
Transcript exons: 28935231-28935423,28935591-28935726,28938762-28938784
TTGATCCCCATCTTGGCGAAGACGAGCTCACACTGGAAGGATTTTCCCTGACCCTTGCCTCCCC
AGATACCCAGGATGAGTGGGACCTTGATGTTGGGGAGGGTCATGAAGTTCTTGGAGATGTGGAC
GACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGGTGTTGTCGAAGTCGTAC
CCATCACCCGTGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCT
GGTCATCGGAGATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTC
CAGCTCCTTCTCCGGCGCTCATCATGATGAGG

Genomic sequence TTGATCCCCATCTTGGCGAAGACGAGCTCACACTGGAAGGATTTTCCCTGACCCTTGCCTCCCC
AGATACCCAGGATGAGTGGGACCTTGATGTTGGGGAGGGTCATGAAGTTCTTGGAGATGTGGAC
GACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGGTGTTGTCGAAGTCGTAC
CTGGAGGTATGTATGCATATATCCAGTCAGTCAATTCGATTCAATTCAGCATATATATGAATAT
GATGAATAAAATCGATTGGTGTGGTGTACAAATTAGATTTAGTACGTACGTTCTGAGACCCTGG
CTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACCCGTGGGAGCCTGGAAAA
GGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCTGGTCATCGGAGATGTCGTAGGCGAG
ACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTCCAGCTCCTTGGCCATCACCTTGAAC
CTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCACCTGCTTCTTCAGCTTCT
TCCCCAGGAAGTTGGTCGGAGTGGACGCCTGCACATCCATTAATCTCGCAAGTAAGTATCCTCA
TTTAATTTGCAGCAAAAACATGTACTTATCAAGCTAGCTAGCTAGCTGCGTATGTATGTGTACC
GGAGCTCCAACGGTGGAGGAGAAGGCAGCAGCCATCTTAATTTGCTGAAAGTCGATGATTGTAG
AGGATCACTGATGATGGCCGGCCGCTGCTGCTCAAAGTGTAGAGGCCGAGCTGCGGTAGGCCTT
AAATAATACAATAGAATTGGACGTCGCCATGGAAGTTGGAGGCTGTGAGAGGCACACACTCGTC
CCTGTGGATCAGCTTCCAGATCCTCCACAGGCCACACGCTGAAGATTGGGTTCTGCACACGTGG
CGCAATCTCGGCCGGCCGATCCACAGCATAGCATGACTTGGACCTGGATCGGAGTCTGTGAGCG
AGTTAGGAGTATATTGTATTAGTGTAGGTAGGAAGGATCTCTTGGCTTCAGTTCCTTGACCTTT
CCTCACCACAGAATTCACCCATTTCTGATCAACTCTTTCTCTCTGTTTTTTCTTTTCTTTCCTT
GCCTCACATTCGTCTCCCGGCCGGCAGCTAGCGACCAGTTGCTTCATCAGCTCAGCTACTACAT
AACCTCTTCATTTTGCATCACCACAGAAAAGCCTTTTGCTGCCTCTCGTTGCCCGGCTTCTTGG
ATGAGGCATGGCATGCAAATTGTATTCTAGTTGGACTACCACAAATATTTTGCTCTGCTACCTG
CACATATTCTGCTTTCTCGATAACCATCAGGCTAGGACTGTCATTTGGCACCACACAAACTTCT
CTTAACATACAACATAAGCATTGTACGTTTTTTCCCCTTTGATGGTTTCCGTTACCACAAAAAT
ACAAAAATTCTAATTTTGCACTGCTGTTGATATTGTTTTTTGGTGAAGCATCAATCGGAGGCAG
CTAAATCTGCAGCAGTGCCTTAAGATGAATTTATTTGTGGTTCATAGCTTTCGTTCCTCCTAAG
CCTCTATATTGCTTTTCGTAACTTTTGAAAATTAATTGTTTGCTCATGTCATGTCAGTAGTAAT
CTTTTATGCAAGTCATGTGAAATTTCTCCTAGCTAGCTTGTCCCTACTAAGACGTTTGAGATGG
AGGCAAGTGATTGGTAACGACACTTGTAAGGTCGAGTCTCCAGTACATTGGAAAATAACAGTCA
TCTCACTAGGCAAGTACTAGCGCACATATTGGAATTGGATAACATTCCCCAACTTGTGCATCAT
TACAGATTTACAGTGATACGCTAATTGTTATCGTGCAACATGATGAATAGCACAGGAACTTTGA
TATAGCATGCATCTGTAGTAACAAATGCAACCCGCAAGTTGAGAATACATCCATATATAGGGAA
GTGGATTTGGATCCCTCAAGGAAATATTCCCTCGTTGATTGCATGTCACTCAAGTGGTTATGAA
AAAAATTGAGAAGATATATTAACATGTGATATATCACTCTACAAACATGCAAATAAAAATTCAA
CTTCGACATCTCGTAACGAAAAAAACAAATTTAACTCTGAATATACATTAACTAGCTGTTGTTT
AATTTGTATTTTTCATTACAATTTGTAGAAGTTGAACTTGAACTTGTATATTTGTGGAGTGTTA
TATCACATGTTAATAGACCTTCTCAATTTTTTTTCAAATTTTTTTATAATCATTTGAATGACAT
GCAAATAACTAGGGGATATCCCCGTATATAGTCAGCATGTGTATATATCAATCAGCGATATGAT
GGCACATCCACAGTATCCAGAGATCGTACGTATCGTTGCATATGCATACAGTACTGCTAGTACA
CTAGTGGATAATTAATGAACTATGTGACAAACGATTGGATTATGTGCAAAAATACTAATAATGT
ATTAGTATATGACAAGTGTAATTTCACCACATATCACATACTTCGAGGTATTAAAATTTGTAGT
GTAAAATTTTAGTATGTACTATACTTTAAAAATTCTCATACGATTAATTTAAATAATACTAGTT
AATTTGGGTGCAGTAGTGACAAATTAAACGTTCCTCTTTGTTAAGGGTACAGGCTATATAGGGT
GCGAAGTACAAGGAAGCATATCGATGGTGTTCATATATATATATATATATATATTCATTAATCA
AGTGCAAAATTAAGAAGCTGGTGGTGAATTGGTGATGGATTGAGTTCAGTTGTAGACGCAGCTG
CCGTCGTCGCTCCTGGCGGTAGGGTCGTAGTTGGCGGCGCGTTGGTCGGTGCATCCCGCCGGCA
CGGGGACGGGCGACTGCTGCTCGGCCTTGCCGTAGAACTCGCCGGAGTCGTGGTTGGCGTCTCC
GAGCGCCGCCTCGCTGAGGTACTTATCGGCGAGCCGCACCCTCTTGACGTTCTCCTGCTCCCTC
ACCAGCATGTGCCGGCCCGTACTCCATCAGCTTGTCGATCGTCATCTTGGGCTGCTCCAACTCG
ATCCGGCGGAGTTCACCAGCCTCCTGCCGATGTTCTCCACCCCGATCTCCGCCACCCACCGCCG
CACCTCGTCGCCGTACACCCGCGCCCGCAGCGCCCCGAAGAAGTCGATGGGAACGCGTCGGGGA
CCTTGTCGCTGCGGAAGATGCCCCTGCACACGCCAATGCGGTCCTCGCGGGTGGGAGCCCAGTA
GAACTTGTCCATGCGCCCGTCGCGGATGAGCGGGAGAAGTCGTTGCCGGTGACGATGATGGGGA
CGGGGGTTGTACATCCCTGGGAGCTGCACGTTGGTGGGGTTGTCCGCGATGTTCATCAGCGTCG
CGTTCACCATCTGGTTGTTCACCGTGTACTGCGTCGTGCCGCCCCGCGTCCAGGTCGTTGATGA
ACAGCACGCACATCTTCCCCTTGTTGATCATGTCCGCCGCCTCGCGGTACCGCTGCCGGATCAG
CTTCGCGGGCTCTCCGGCGCTCATCATGATGAGG
Conservation Information
Conserved circRNAs osi_circ_003253*
PMCS 0.708174479
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017