Plant Circular RNA Database

Detail information of Os11g0707000_circ_ag.1

			
						 General Information
					
						CircRNA Name
						Os11g0707000_circ_ag.1
					
						ID in PlantcircBase
						osa_circ_010229
					
						Alias
						Os11circ11913
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 28935227-28939076  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 Os11g0707000_circ_g.15 Os11g0707000_circ_g.16 Os11g0707000_circ_g.17 Os11g0707000_circ_g.18 Os11g0707000_circ_g.19 Os11g0707000_circ_g.20 Os11g0707000_circ_g.21 Os11g0707000_circ_g.22 Os11g0707000_circ_g.23 Os11g0707000_circ_g.24 Os11g0707000_circ_g.25 Os11g0707000_circ_g.26 Os11g0707000_circ_g.27 Os11g0707000_circ_g.28 Os11g0707000_circ_g.29 Os11g0707000_circ_ag.2 Os11g0707000_circ_ag.3 Os11g0707000_circ_g.4 Os11g0707000_circ_g.5 Os11g0707000_circ_g.6 Os11g0707000_circ_ag.7 Os11g0707000_circ_ag.8 Os11g0707000_circ_g.9 Os11g0707000_circ_g.10 Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os11g0707000_circ_ag.1
ID in PlantcircBase	osa_circ_010229
Alias	Os11circ11913
Organism	Oryza sativa
Position	chr11: 28935227-28939076 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	SMALT, Segemehl
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 Os11g0707000_circ_g.15 Os11g0707000_circ_g.16 Os11g0707000_circ_g.17 Os11g0707000_circ_g.18 Os11g0707000_circ_g.19 Os11g0707000_circ_g.20 Os11g0707000_circ_g.21 Os11g0707000_circ_g.22 Os11g0707000_circ_g.23 Os11g0707000_circ_g.24 Os11g0707000_circ_g.25 Os11g0707000_circ_g.26 Os11g0707000_circ_g.27 Os11g0707000_circ_g.28 Os11g0707000_circ_g.29 Os11g0707000_circ_ag.2 Os11g0707000_circ_ag.3 Os11g0707000_circ_g.4 Os11g0707000_circ_g.5 Os11g0707000_circ_g.6 Os11g0707000_circ_ag.7 Os11g0707000_circ_ag.8 Os11g0707000_circ_g.9 Os11g0707000_circ_g.10 Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14
Support reads	2
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATTAATTAATTAATCAAAATGTGCATGCAACGCAGCATTATATTTCAAGCATTATTGAATGTG
CTTAATTACGTACGTTCTGAGACCCTGGCTGAGGTAtaacttgatccccatcttggcgaagacg
agctcacactggaaggattttccctgacccttgcctccccagatacccaggatgagtgggacct
tgatgttg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TAACTTGATCCCCATCTTGGCGAAGACGAGCTCACACTGGAAGGATTTTCCCTGACCCTTGCCT
CCCCAGATACCCAGGATGAGTGGGACCTTGATGTTGGGGAGGGTCATGAAGTTCTTGGAGATGT
GGACGACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGGTGTTGTCGAAGTC
GTACCTGGAGGTATGTATGCATATATCCAGTCAGTCAATTCGATTCAATTCAGCATATATATGA
ATATGATGAATAAAATCGATTGGTGTGGTGTACAAATTAGATTTAGTACGTACGTTCTGAGACC
CTGGCTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACCCGTGGGAGCCTGG
AAAAGGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCTGGTCATCGGAGATGTCGTAGG
CGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTCCAGCTCCTTGGCCATCACCTT
GAACCTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCACCTGCTTCTTCAGC
TTCTTCCCCAGGAAGTTGGTCGGAGTGGACGCCTGCACATCCATTAATCTCGCAAGTAAGTATC
CTCATTTAATTTGCAGCAAAAACATGTACTTATCAAGCTAGCTAGCTAGCTGCGTATGTATGTG
TACCGGAGCTCCAACGGTGGAGGAGAAGGCAGCAGCCATCTTAATTTGCTGAAAGTCGATGATT
GTAGAGGATCACTGATGATGGCCGGCCGCTGCTGCTCAAAGTGTAGAGGCCGAGCTGCGGTAGG
CCTTAAATAATACAATAGAATTGGACGTCGCCATGGAAGTTGGAGGCTGTGAGAGGCACACACT
CGTCCCTGTGGATCAGCTTCCAGATCCTCCACAGGCCACACGCTGAAGATTGGGTTCTGCACAC
GTGGCGCAATCTCGGCCGGCCGATCCACAGCATAGCATGACTTGGACCTGGATCGGAGTCTGTG
AGCGAGTTAGGAGTATATTGTATTAGTGTAGGTAGGAAGGATCTCTTGGCTTCAGTTCCTTGAC
CTTTCCTCACCACAGAATTCACCCATTTCTGATCAACTCTTTCTCTCTGTTTTTTCTTTTCTTT
CCTTGCCTCACATTCGTCTCCCGGCCGGCAGCTAGCGACCAGTTGCTTCATCAGCTCAGCTACT
ACATAACCTCTTCATTTTGCATCACCACAGAAAAGCCTTTTGCTGCCTCTCGTTGCCCGGCTTC
TTGGATGAGGCATGGCATGCAAATTGTATTCTAGTTGGACTACCACAAATATTTTGCTCTGCTA
CCTGCACATATTCTGCTTTCTCGATAACCATCAGGCTAGGACTGTCATTTGGCACCACACAAAC
TTCTCTTAACATACAACATAAGCATTGTACGTTTTTTCCCCTTTGATGGTTTCCGTTACCACAA
AAATACAAAAATTCTAATTTTGCACTGCTGTTGATATTGTTTTTTGGTGAAGCATCAATCGGAG
GCAGCTAAATCTGCAGCAGTGCCTTAAGATGAATTTATTTGTGGTTCATAGCTTTCGTTCCTCC
TAAGCCTCTATATTGCTTTTCGTAACTTTTGAAAATTAATTGTTTGCTCATGTCATGTCAGTAG
TAATCTTTTATGCAAGTCATGTGAAATTTCTCCTAGCTAGCTTGTCCCTACTAAGACGTTTGAG
ATGGAGGCAAGTGATTGGTAACGACACTTGTAAGGTCGAGTCTCCAGTACATTGGAAAATAACA
GTCATCTCACTAGGCAAGTACTAGCGCACATATTGGAATTGGATAACATTCCCCAACTTGTGCA
TCATTACAGATTTACAGTGATACGCTAATTGTTATCGTGCAACATGATGAATAGCACAGGAACT
TTGATATAGCATGCATCTGTAGTAACAAATGCAACCCGCAAGTTGAGAATACATCCATATATAG
GGAAGTGGATTTGGATCCCTCAAGGAAATATTCCCTCGTTGATTGCATGTCACTCAAGTGGTTA
TGAAAAAAATTGAGAAGATATATTAACATGTGATATATCACTCTACAAACATGCAAATAAAAAT
TCAACTTCGACATCTCGTAACGAAAAAAACAAATTTAACTCTGAATATACATTAACTAGCTGTT
GTTTAATTTGTATTTTTCATTACAATTTGTAGAAGTTGAACTTGAACTTGTATATTTGTGGAGT
GTTATATCACATGTTAATAGACCTTCTCAATTTTTTTTCAAATTTTTTTATAATCATTTGAATG
ACATGCAAATAACTAGGGGATATCCCCGTATATAGTCAGCATGTGTATATATCAATCAGCGATA
TGATGGCACATCCACAGTATCCAGAGATCGTACGTATCGTTGCATATGCATACAGTACTGCTAG
TACACTAGTGGATAATTAATGAACTATGTGACAAACGATTGGATTATGTGCAAAAATACTAATA
ATGTATTAGTATATGACAAGTGTAATTTCACCACATATCACATACTTCGAGGTATTAAAATTTG
TAGTGTAAAATTTTAGTATGTACTATACTTTAAAAATTCTCATACGATTAATTTAAATAATACT
AGTTAATTTGGGTGCAGTAGTGACAAATTAAACGTTCCTCTTTGTTAAGGGTACAGGCTATATA
GGGTGCGAAGTACAAGGAAGCATATCGATGGTGTTCATATATATATATATATATATATTCATTA
ATCAAGTGCAAAATTAAGAAGCTGGTGGTGAATTGGTGATGGATTGAGTTCAGTTGTAGACGCA
GCTGCCGTCGTCGCTCCTGGCGGTAGGGTCGTAGTTGGCGGCGCGTTGGTCGGTGCATCCCGCC
GGCACGGGGACGGGCGACTGCTGCTCGGCCTTGCCGTAGAACTCGCCGGAGTCGTGGTTGGCGT
CTCCGAGCGCCGCCTCGCTGAGGTACTTATCGGCGAGCCGCACCCTCTTGACGTTCTCCTGCTC
CCTCACCAGCATGTGCCGGCCCGTACTCCATCAGCTTGTCGATCGTCATCTTGGGCTGCTCCAA
CTCGATCCGGCGGAGTTCACCAGCCTCCTGCCGATGTTCTCCACCCCGATCTCCGCCACCCACC
GCCGCACCTCGTCGCCGTACACCCGCGCCCGCAGCGCCCCGAAGAAGTCGATGGGAACGCGTCG
GGGACCTTGTCGCTGCGGAAGATGCCCCTGCACACGCCAATGCGGTCCTCGCGGGTGGGAGCCC
AGTAGAACTTGTCCATGCGCCCGTCGCGGATGAGCGGGAGAAGTCGTTGCCGGTGACGATGATG
GGGACGGGGGTTGTACATCCCTGGGAGCTGCACGTTGGTGGGGTTGTCCGCGATGTTCATCAGC
GTCGCGTTCACCATCTGGTTGTTCACCGTGTACTGCGTCGTGCCGCCCCGCGTCCAGGTCGTTG
ATGAACAGCACGCACATCTTCCCCTTGTTGATCATGTCCGCCGCCTCGCGGTACCGCTGCCGGA
TCAGCTTCGCGGGCTCTCCGGCGCTCATCATGATGAGGCTGCATGCATGCAGTTGTACTACTAT
TACAACACACGCAGCATGCAATGCAGTTGTACTTCCTACTCTCACTTGATCCCCATCTTGGCGA
AGACGAGATCACACTGGAACGACTTGCCCTGGATGTTGGGCAGCTTCATCAAGTTCTTGGAGAT
GTGTCCATGGTGTTGTCCAGGTTGTACCTGCAGCAATTAATTAATTAATTAATCAAAATGTGCA
TGCAACGCAGCATTATATTTCAAGCATTATTGAATGTGCTTAATTACGTACGTTCTGAGACCCT
GGCTGAGGTA
						
					

			
		

Sequences
Splice junction sequence	AATTAATTAATTAATCAAAATGTGCATGCAACGCAGCATTATATTTCAAGCATTATTGAATGTG CTTAATTACGTACGTTCTGAGACCCTGGCTGAGGTAtaacttgatccccatcttggcgaagacg agctcacactggaaggattttccctgacccttgcctccccagatacccaggatgagtgggacct tgatgttg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TAACTTGATCCCCATCTTGGCGAAGACGAGCTCACACTGGAAGGATTTTCCCTGACCCTTGCCT CCCCAGATACCCAGGATGAGTGGGACCTTGATGTTGGGGAGGGTCATGAAGTTCTTGGAGATGT GGACGACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGGTGTTGTCGAAGTC GTACCTGGAGGTATGTATGCATATATCCAGTCAGTCAATTCGATTCAATTCAGCATATATATGA ATATGATGAATAAAATCGATTGGTGTGGTGTACAAATTAGATTTAGTACGTACGTTCTGAGACC CTGGCTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACCCGTGGGAGCCTGG AAAAGGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCTGGTCATCGGAGATGTCGTAGG CGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTCCAGCTCCTTGGCCATCACCTT GAACCTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCACCTGCTTCTTCAGC TTCTTCCCCAGGAAGTTGGTCGGAGTGGACGCCTGCACATCCATTAATCTCGCAAGTAAGTATC CTCATTTAATTTGCAGCAAAAACATGTACTTATCAAGCTAGCTAGCTAGCTGCGTATGTATGTG TACCGGAGCTCCAACGGTGGAGGAGAAGGCAGCAGCCATCTTAATTTGCTGAAAGTCGATGATT GTAGAGGATCACTGATGATGGCCGGCCGCTGCTGCTCAAAGTGTAGAGGCCGAGCTGCGGTAGG CCTTAAATAATACAATAGAATTGGACGTCGCCATGGAAGTTGGAGGCTGTGAGAGGCACACACT CGTCCCTGTGGATCAGCTTCCAGATCCTCCACAGGCCACACGCTGAAGATTGGGTTCTGCACAC GTGGCGCAATCTCGGCCGGCCGATCCACAGCATAGCATGACTTGGACCTGGATCGGAGTCTGTG AGCGAGTTAGGAGTATATTGTATTAGTGTAGGTAGGAAGGATCTCTTGGCTTCAGTTCCTTGAC CTTTCCTCACCACAGAATTCACCCATTTCTGATCAACTCTTTCTCTCTGTTTTTTCTTTTCTTT CCTTGCCTCACATTCGTCTCCCGGCCGGCAGCTAGCGACCAGTTGCTTCATCAGCTCAGCTACT ACATAACCTCTTCATTTTGCATCACCACAGAAAAGCCTTTTGCTGCCTCTCGTTGCCCGGCTTC TTGGATGAGGCATGGCATGCAAATTGTATTCTAGTTGGACTACCACAAATATTTTGCTCTGCTA CCTGCACATATTCTGCTTTCTCGATAACCATCAGGCTAGGACTGTCATTTGGCACCACACAAAC TTCTCTTAACATACAACATAAGCATTGTACGTTTTTTCCCCTTTGATGGTTTCCGTTACCACAA AAATACAAAAATTCTAATTTTGCACTGCTGTTGATATTGTTTTTTGGTGAAGCATCAATCGGAG GCAGCTAAATCTGCAGCAGTGCCTTAAGATGAATTTATTTGTGGTTCATAGCTTTCGTTCCTCC TAAGCCTCTATATTGCTTTTCGTAACTTTTGAAAATTAATTGTTTGCTCATGTCATGTCAGTAG TAATCTTTTATGCAAGTCATGTGAAATTTCTCCTAGCTAGCTTGTCCCTACTAAGACGTTTGAG ATGGAGGCAAGTGATTGGTAACGACACTTGTAAGGTCGAGTCTCCAGTACATTGGAAAATAACA GTCATCTCACTAGGCAAGTACTAGCGCACATATTGGAATTGGATAACATTCCCCAACTTGTGCA TCATTACAGATTTACAGTGATACGCTAATTGTTATCGTGCAACATGATGAATAGCACAGGAACT TTGATATAGCATGCATCTGTAGTAACAAATGCAACCCGCAAGTTGAGAATACATCCATATATAG GGAAGTGGATTTGGATCCCTCAAGGAAATATTCCCTCGTTGATTGCATGTCACTCAAGTGGTTA TGAAAAAAATTGAGAAGATATATTAACATGTGATATATCACTCTACAAACATGCAAATAAAAAT TCAACTTCGACATCTCGTAACGAAAAAAACAAATTTAACTCTGAATATACATTAACTAGCTGTT GTTTAATTTGTATTTTTCATTACAATTTGTAGAAGTTGAACTTGAACTTGTATATTTGTGGAGT GTTATATCACATGTTAATAGACCTTCTCAATTTTTTTTCAAATTTTTTTATAATCATTTGAATG ACATGCAAATAACTAGGGGATATCCCCGTATATAGTCAGCATGTGTATATATCAATCAGCGATA TGATGGCACATCCACAGTATCCAGAGATCGTACGTATCGTTGCATATGCATACAGTACTGCTAG TACACTAGTGGATAATTAATGAACTATGTGACAAACGATTGGATTATGTGCAAAAATACTAATA ATGTATTAGTATATGACAAGTGTAATTTCACCACATATCACATACTTCGAGGTATTAAAATTTG TAGTGTAAAATTTTAGTATGTACTATACTTTAAAAATTCTCATACGATTAATTTAAATAATACT AGTTAATTTGGGTGCAGTAGTGACAAATTAAACGTTCCTCTTTGTTAAGGGTACAGGCTATATA GGGTGCGAAGTACAAGGAAGCATATCGATGGTGTTCATATATATATATATATATATATTCATTA ATCAAGTGCAAAATTAAGAAGCTGGTGGTGAATTGGTGATGGATTGAGTTCAGTTGTAGACGCA GCTGCCGTCGTCGCTCCTGGCGGTAGGGTCGTAGTTGGCGGCGCGTTGGTCGGTGCATCCCGCC GGCACGGGGACGGGCGACTGCTGCTCGGCCTTGCCGTAGAACTCGCCGGAGTCGTGGTTGGCGT CTCCGAGCGCCGCCTCGCTGAGGTACTTATCGGCGAGCCGCACCCTCTTGACGTTCTCCTGCTC CCTCACCAGCATGTGCCGGCCCGTACTCCATCAGCTTGTCGATCGTCATCTTGGGCTGCTCCAA CTCGATCCGGCGGAGTTCACCAGCCTCCTGCCGATGTTCTCCACCCCGATCTCCGCCACCCACC GCCGCACCTCGTCGCCGTACACCCGCGCCCGCAGCGCCCCGAAGAAGTCGATGGGAACGCGTCG GGGACCTTGTCGCTGCGGAAGATGCCCCTGCACACGCCAATGCGGTCCTCGCGGGTGGGAGCCC AGTAGAACTTGTCCATGCGCCCGTCGCGGATGAGCGGGAGAAGTCGTTGCCGGTGACGATGATG GGGACGGGGGTTGTACATCCCTGGGAGCTGCACGTTGGTGGGGTTGTCCGCGATGTTCATCAGC GTCGCGTTCACCATCTGGTTGTTCACCGTGTACTGCGTCGTGCCGCCCCGCGTCCAGGTCGTTG ATGAACAGCACGCACATCTTCCCCTTGTTGATCATGTCCGCCGCCTCGCGGTACCGCTGCCGGA TCAGCTTCGCGGGCTCTCCGGCGCTCATCATGATGAGGCTGCATGCATGCAGTTGTACTACTAT TACAACACACGCAGCATGCAATGCAGTTGTACTTCCTACTCTCACTTGATCCCCATCTTGGCGA AGACGAGATCACACTGGAACGACTTGCCCTGGATGTTGGGCAGCTTCATCAAGTTCTTGGAGAT GTGTCCATGGTGTTGTCCAGGTTGTACCTGCAGCAATTAATTAATTAATTAATCAAAATGTGCA TGCAACGCAGCATTATATTTCAAGCATTATTGAATGTGCTTAATTACGTACGTTCTGAGACCCT GGCTGAGGTA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.271895247

Conservation Information
Conserved circRNAs	NA
PMCS	0.271895247

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os11g0707000_circ_ag.1

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