Detail information of BGIOSGA033513_circ_ag.1


General Information
CircRNA Name BGIOSGA033513_circ_ag.1
ID in PlantcircBase osi_circ_003253
Alias 11:22986857|22990631
Organism Oryza sativa ssp. indica
Position chr11: 22986857-22990631  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033513_circ_igg.1 BGIOSGA033513_circ_igg.2 BGIOSGA033513_circ_igg.3 BGIOSGA033513_circ_igg.4 BGIOSGA033513_circ_g.1 BGIOSGA033513_circ_g.2 BGIOSGA033513_circ_g.3 BGIOSGA033513_circ_g.4 BGIOSGA033513_circ_g.5 BGIOSGA033513_circ_g.6 BGIOSGA033513_circ_g.7 BGIOSGA033513_circ_g.8 BGIOSGA033513_circ_g.9 BGIOSGA033513_circ_g.10 BGIOSGA033513_circ_g.11 BGIOSGA033513_circ_g.12 BGIOSGA033513_circ_g.13 BGIOSGA033513_circ_g.14 BGIOSGA033513_circ_g.15 BGIOSGA033513_circ_g.16 BGIOSGA033513_circ_g.17 BGIOSGA033513_circ_g.18 BGIOSGA033513_circ_g.19 BGIOSGA033513_circ_g.20 BGIOSGA033513_circ_g.21 BGIOSGA033513_circ_g.2 BGIOSGA033513_circ_g.3 BGIOSGA033513_circ_g.4 BGIOSGA033513_circ_g.5 BGIOSGA033513_circ_g.6 BGIOSGA033513_circ_g.7 BGIOSGA033513_circ_g.8 BGIOSGA033513_circ_g.9 BGIOSGA033513_circ_g.10 BGIOSGA033513_circ_g.11 BGIOSGA033513_circ_igg.12 BGIOSGA033513_circ_igg.13 BGIOSGA033513_circ_g.14 BGIOSGA033513_circ_igg.15 BGIOSGA033513_circ_igg.16
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGATCATGTCCGCCGCCTCGCGGTACCGCTGCCGGATCAGCTTCGCGGGCTCTCCGGCGTTG
CCGCTCTCCAGCTCTCCGGCGCTCATCATGATGAGGttgatccccatcttggcgaagacgagct
cacactggaaggattttccctgacccttgcctccccagatacccaggatgagtgggaccttgat
gttgggga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGATCCCCATCTTGGCGAAGACGAGCTCACACTGGAAGGATTTTCCCTGACCCTTGCCTCCCC
AGATACCCAGGATGAGTGGGACCTTGATGTTGGGGAGGGTCATGAAGTTCTTGGAGATGTGGAC
GACGAGCTTGTCCATGAAAGCAGGGGCGATGTAGAAGCCTCCCATGGTGTTGTCGAAGTCGTAC
CTGGAGTCAGTCAATTCGATTCAATTCAGCATATATATGAATATGATGAATAAAATCGATTGGT
GTGGTGTACAAATTAGATTTAGTACGTACGTTCTGAGACCCTGGCTGAGGTACTCGTAGGAGCT
GAGGACGGCCTCGTGGGTGCCATCACCCGTGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTC
CCCCTGGTGATGTCCTGCTGGTCATCGGAGATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGT
CGGTCTGCTTGCCCTCGTCCAGCTCCTTGGCCATCACCTTGAACCTGTTGATGTTGGAGCTCTT
GCCATGGTAGTTCACCGCCGATGTCACCTGCTTCTTCAGCTTCTTCCCCAGGAAGTTGGTCGGA
GTGGACGCCTGCACATCCATTAATCTCGCAAGTAAGTATCCTCATTTAATTTGCAGCAAAAACA
TGTACTTATCAAGCTAGCTAGCTAGCTGCGTATGTATGTGTACCGGAGCTCCAACGGTGGAGGA
GAAGGCAGCAGCCATCTTAATTTGCTGAAAGTCGATGATTGTAGAGGATCACTGATGATGGCCG
GCCGCTGCTGCTCAAAGTGTAGAGGCCGAGCTGCGGTAGGCCTTAAATAATACAATAGAATTGG
ACGTCGCCATGGAAGTTGGAGGCTGTGAGAGGCACACACTCCTCCCTGTGGATCAGCTTCCAGA
TCCTCCACAGGCCACACGCTGAAGATTGGGTTCTGCACACGTGGCGCAATCTCGGCCGGCCGAT
CCACAGCATAGCATGACTTGGACCTGGATCGGAGTCTGTGAGCGAGTTAGGAGTATATTGTATT
AGTGTAGGTAGGAAGGATCTCTTGGCTTCAGTTCCTTGACCTTTCCTCACCACAGAATTCACCC
ATTTCTGATCAACTCTTTCTCTCTGTTTTTTCTTTTCTTTCCTTGCCTCACATTCGTCTCCCGG
CCGGCAGCTAGCGACCAGTTGCTTCATCAGCTCAGCTACTACATAACCTCTTCATTTTGCATCA
CCACAGAAAAGCCTTTTGCTGCCTCTCGTTGCCCGGCTTCTTGGATGAGGCATGGCATGCAAAT
TGTATTCTAGTTGGACTACCACAAATATTTTGCTCTGCTACCTGCACATATTCTGCTTTCTCGA
TAACCATCAGGCTAGGACTGTCATTTGGCACCACACAAACTTCTCTTAACATACAACATAAGCA
TTGTACGTTTTTTCCCCTTTGATGGTTTCCGTTACCACAAAAATACAAAAATTCTAATTTTGCA
CTGCTGTTGATATTGTTTTTTGGTGAAGCATCAATCGGAGGCAGCTAAATCTGCAGCAGTGCCT
TAAGATGAATTTATTTGTGGTTCATAGCTTTCGTTCCTCCTAAGCCTCTATATTGCTTTTCGTA
ACTTTTGAAAATTAATTGTTTGCTCATGTCATGTCAGTAGTAATCTTTTATGCAAGTCATGTGA
AATTTCTCCTAGCTAGCTTGTCCCTACTAAGGCTGAGTTTGAGTGGGAGGAGATTGAGAAGATT
GGGAAGATACGCAAAACGAGGTGAGCTATTAGAGCATGATTAGTTGAGTATTAATTATTTTAAA
TTTCAAAAATAGATTAATATGATTTTTTAAAGCAACTTTCGTATAGAAACTTTTTGTAAAAAAC
ACACCGTTTAGTAGTTCGGAAAACGTGAGCGCGGGAAACGAGACAAACTCACTCACAATCTCCT
CCTGCCGAACGCTCCCTAAGACGTTTGAGATGGAGGCAAGTGATTGGTAACGACACTTGTAAGG
TCGAGTCTCCAGTACATTGGAAAATAACAGTCATGGATAACATTCCCCAACTTGTGCATCATTA
CAGTGATACGCTAATTGTTATCGTGCAACATGATGAATAGCACAGGAACTTTGATATAGCATGC
ATCTGTAGTAACAAATGCAACCCGCAAGTTGAGAATACATCAATACATCCATATATAGGGAAGT
GGATTTGGATCCCTCAAGGAAATATTCCCTCGTTGTTTGCATGTCACTCAAGTGGTTATGAAAA
AAATTGAGAAGATGTATTAACATGTGATATATCACTCTACAAACATGCAAATAAAAATTCAACT
TCGACATCTCGCAACGAAAAAAACAAATTTGACTCTGAATATACATTAACTAGCTGTGGTTTAA
TTTGTATTTTTCTTTACAATTTATAGAAATTGAACTTGAACTTGTATATTTGTGGAGTGTTATA
TCACATGTTAATAGACCTTCTTAATTTTTTTAAAATTTTTTTATAATCATTTGAATGACATGCA
AAAAAAACTAGGGATATCCCCATATATAGTCAGCATGTGTATATATCAATCAGCGAATGATGGC
ACATCCACAGTATCCAGAGATCGTACGTATCGTTGCATATGCATACAGTACTGCTAGTACACTA
GTGGATAATTAATGAACTATGTGACAAACGATTGGATTATGTGGAAATACTAATAATGTATTAG
TATATGACAAGTGTAATTTCACCACATATCACATACTTCGAGGTATTAAAATTTGTAGTGTAAA
ATTTTAGCATGTACTATACTTTAAAAATTCTCATACGATTAATTTAAATAATACTAGTTAATTT
GGGTGCAGTAGTGACAAATTAAACGTTCCTCTTTGTTAAGGGTACAGGCTATATAGGGTGCGAA
GTACAAGGAAGCATATCGATGGTGTTCATATATATATATATATATATATATATATATTCATTAA
TCAAGTGCAAAATTAAGAAGCTGGTGGTGAATTGGTGATGGATTGAGTTCAGTTGTAGACGCAG
CTGCCGTCGTCGCTCCTGGCGGTAGGGTCGTAGTTGGCGGCGCGTTGGTCGGTGCATCCCGCCG
GCACGGGGACGGGCGACTGCTGCGCGGCCTTGCCGTAGAACTCGCCGGAGTCGTGGTTGGCGTC
TCCGAGCGCCGCCTCGCTGAGGTACTTATCGGCGAGCCGCACCCTCTTGACGTTCTCCTGCTCC
CTCACCAGCATGTGCCGGCCCGTACTCCATCAGCTTGTCGATCGTCATCTTGGGCTGCTCCAAC
TCGATCCGGCGGAGTTCACCAGCCTCCTGCCGATGTTCTCCACCCCGATCTCCGCCACCCACCG
CCGCACCTCGTCGCCGTACACCCGCGCCCGCAGCGCCCCGAAGAAGTCGATGGGAACGCGTCGG
GGACCTTGTCGCTGCGGAAGATGCCCCTGCACACGCCAATGCGGTCCTCGCGGGTGGGAGCCCA
GTAGAACTTGTCCATGCGCCCGTCGCGGATGAGCGGGAGAAGTCGTTGCCGGTGACGATGATGG
GGACACGGGGGTTGTACATCCCTGGGAGCTGCACGTTGGTGGGGTTGTCCGCGATGTTCATCAG
CGTCGCGTTCACCATCTGGTTGTTCACCGTGTACTGCGTCGTGCCGCCCCGCGTCCAGGTCGTT
GATGAACAGCAGGCACATCTTCCCCTTGTTGATCATGTCCGCCGCCTCGCGGTACCGCTGCCGG
ATCAGCTTCGCGGGCTCTCCGGCGTTGCCGCTCTCCAGCTCTCCGGCGCTCATCATGATGAGG
Conservation Information
Conserved circRNAs osa_circ_010230*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021