Plant Circular RNA Database

Detail information of BGIOSGA019441_circ_g.12

			
						 General Information
					
						CircRNA Name
						BGIOSGA019441_circ_g.12
					
						ID in PlantcircBase
						osi_circ_006081
					
						Alias
						5:9887671|9890192
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr5: 9887671-9890192  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA019441						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							BGIOSGA019441_circ_g.8 BGIOSGA019441_circ_g.9 BGIOSGA019441_circ_g.10 BGIOSGA019441_circ_g.11 BGIOSGA019441_circ_g.13 BGIOSGA019441_circ_g.14 BGIOSGA019441_circ_g.15 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA019441-TA:6

General Information
CircRNA Name	BGIOSGA019441_circ_g.12
ID in PlantcircBase	osi_circ_006081
Alias	5:9887671\|9890192
Organism	Oryza sativa ssp. indica
Position	chr5: 9887671-9890192 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA019441
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	BGIOSGA019441_circ_g.8 BGIOSGA019441_circ_g.9 BGIOSGA019441_circ_g.10 BGIOSGA019441_circ_g.11 BGIOSGA019441_circ_g.13 BGIOSGA019441_circ_g.14 BGIOSGA019441_circ_g.15
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA019441-TA:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAAGATTGGGCTGAATGGATGAGGCACTTCAGTATTGCGCTTCTCAAAGAATCACCATCTCCT
GCTTTACGCACTTGCGCAAGACTAGCACAACTTCAGgttcttcaccttgttgaacaactatgct
tggcactgaatgacgaattcagaatgtatatacttcacatattgccaagttgtattcaagtcct
gggtgatg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTCTTCACCTTGTTGAACAACTATGCTTGGCACTGAATGACGAATTCAGAATGTATATACTTC
ACATATTGCCAAGTTGTATTCAAGTCCTGGGTGATGCTGAACGCTGCAATGACTATTACTATGT
TCCTGACATATTGCACACCCTAGAGGTGTTTGGAGGTCCGTCTCCAGTTCTGTTTCTTCTTATG
TCCACAACAAATCATTGGTCAGTTTTAACTTGTTATGATGAATTTCTCCTTTTAGGAAATTTGG
ATGAGCACATGCACTTGGTTGCTCCAGTACTTGTTCGGTTATTTAAAGTGGAGCTAGTTGATAT
CAGACGCCGTGCCATTGTCACTTTGACTAAACTCATACCTACGGTGCAGGTCGGTTATTGTTCA
ATTTTAGTTTGACTATTATAGTTTTTACCTAATACACAGAAACTTCTGTGCCTTTCTTCTGTAC
ATCATGTGTTCTCAACATATCTTGTCCAGGTTGGTACTCATGTTTCGGTTTTGGTGCATCATCT
AAAGCTAGTTTTGGATGGGTAAGACTTCTGGTGACAAGTAACATTCTATTTCTTGTGTATTATG
GTTGTATCAAGAAAACATTGAGGGATTATGAACCACTATTTCTTGTTTTCAGACCATGTTTATG
AGTATAATGCTTATCATCTGTTTGTCAACTTTTGTACTTTTTAGTTGTGCATCACCAGATTGTT
AATTTGTCTTTCTGTGGCTAGAAACAATGATGATCTACGGAAAGATGCAGCAGAGGCGCTTTGT
TGTCTTGCACATGCTCTTGGAGAAGATTTTACAATATTCGTGTCATCAATACACAAGCTTCTTG
TGAAGCACCATATGCGGGTACTTGTTTAGTTTGGACAAAATCTGCTTAGCCCCCTGAAGTATCA
GGGTTTGTCTACTTAACCCCATGAACCTTGAAAAACAGTTCAAATAAATCACTAGAGTAGTTTT
TAATTGGTTTTGCTATGTAGATGATAACGTGGCAGCTGGTTATTGCTTGCATGGCCGACATGTT
AGCCCATTTTACGTAAACCAACCCAACCACTCCCTTTCCCTGATAGGTGAACCCGGGAACTACT
CATTAGTTGTGATGTGCTTCAATGCCAGGCTGTCTTGTTGAAATACATTTAACCAAATCCATTG
CCATCTCACTGTCCTCATCATTATTCATGCGACCAAAAGTCCAAAACCACTCTAGGGAATTATT
TGAACTGATTTTTGTACTTCAGGGTTTAAGTAGACTAACCCCAAACTTTAGGCGGTTAAATAGA
CTTTTTTACTTTTAGTATTTTGCACATAGCATTTTGAATGGCTTGGTCTAATTTCTAATTACTG
CTATCTTTTACAGTATAGAAAATGGGATGAGATTGAAAATCGATTACTAAGGCGAGAGCCACTC
ATCTCTGAGAACTTATCAGTACAAAAGTACACACAATGCCCGCCTGAAGTCATTAGTGACCCTC
TTGATGATTTTGGTGGTGTTCCTTCTGAGGAGGCTGATGAAACACAGCGGCAACCAAGAAGTCA
TCAAGTAAGATGCTTTGTTGTTTGGAAAACATTGGGACATTGGGACACTATGGATTCTCTGTGC
CATTGTGCAATTTACTAAAGTTCTTTTTTTGTTAAGTGTAGTAGTGTGTTACGATTTTTTTTTT
TTGGTAAAATTGCTTTCGGACATTTGGCATTTGGCAAAAAGCATGATGTTTTTGCATTCTGAAA
ATATGAAAAAACTGTGAGACATGACAATCGGATGACATTTTATTTAACCTTAATTTTATTTGCA
AAAAAAACCTATAAGAATCCTTGTTTGCATAGCAACTTAAAAAGATAAGCATAGTGCAGCATAG
CACAACCACCACAAACCGAGCCTAATTGTTATTCACTGTTCAGCTTGGTTTTAGGGCTCCAGGC
TCGTCTTAGTTCATAAAACCTTCTGACTTTGTTGAAGTCTTCAACTATGCTTTACCTGTGAAGA
TCTTTGATCTTTTTGGGAATTTCAATCTTACCCAGCTGCTCTGCATAGCTTATTAGTTCTGAAC
CTGCAGTAAGTGTATTTGTTTAGCTGAGCTGCTCCCTGTATCAGTTAATTATGTTTTGAAAAAT
GAACATCCAAGAAGTAGCGGGTGAGTTATTGTGAAGTGTACTGTTGGTCGTTTTGCCTAGTTTG
CATCATATTCGATAACTGTTACTCTTAAGTTCCTGTGCGCCCCTTGTCCACACCTAAAATAAAC
TACATATTTAATAGGAGGGGATATCCTCTAATATTTTCTTTCATGTATTAATACCCTGCATTTT
CATTTACTTGTAATATTAAAAGTTGGTTTGTTCTTTTTTAACATTAAGGATTTTGACTTCTACA
GGTCAATGATGTTCGACTGAGAAGTGCCGGTGAGGCTTCTCAAAGGAGCACTAGAGAAGATTGG
GCTGAATGGATGAGGCACTTCAGTATTGCGCTTCTCAAAGAATCACCATCTCCTGCTTTACGCA
CTTGCGCAAGACTAGCACAACTTCAG
						
					

			
		

Sequences
Splice junction sequence	AGAAGATTGGGCTGAATGGATGAGGCACTTCAGTATTGCGCTTCTCAAAGAATCACCATCTCCT GCTTTACGCACTTGCGCAAGACTAGCACAACTTCAGgttcttcaccttgttgaacaactatgct tggcactgaatgacgaattcagaatgtatatacttcacatattgccaagttgtattcaagtcct gggtgatg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTCTTCACCTTGTTGAACAACTATGCTTGGCACTGAATGACGAATTCAGAATGTATATACTTC ACATATTGCCAAGTTGTATTCAAGTCCTGGGTGATGCTGAACGCTGCAATGACTATTACTATGT TCCTGACATATTGCACACCCTAGAGGTGTTTGGAGGTCCGTCTCCAGTTCTGTTTCTTCTTATG TCCACAACAAATCATTGGTCAGTTTTAACTTGTTATGATGAATTTCTCCTTTTAGGAAATTTGG ATGAGCACATGCACTTGGTTGCTCCAGTACTTGTTCGGTTATTTAAAGTGGAGCTAGTTGATAT CAGACGCCGTGCCATTGTCACTTTGACTAAACTCATACCTACGGTGCAGGTCGGTTATTGTTCA ATTTTAGTTTGACTATTATAGTTTTTACCTAATACACAGAAACTTCTGTGCCTTTCTTCTGTAC ATCATGTGTTCTCAACATATCTTGTCCAGGTTGGTACTCATGTTTCGGTTTTGGTGCATCATCT AAAGCTAGTTTTGGATGGGTAAGACTTCTGGTGACAAGTAACATTCTATTTCTTGTGTATTATG GTTGTATCAAGAAAACATTGAGGGATTATGAACCACTATTTCTTGTTTTCAGACCATGTTTATG AGTATAATGCTTATCATCTGTTTGTCAACTTTTGTACTTTTTAGTTGTGCATCACCAGATTGTT AATTTGTCTTTCTGTGGCTAGAAACAATGATGATCTACGGAAAGATGCAGCAGAGGCGCTTTGT TGTCTTGCACATGCTCTTGGAGAAGATTTTACAATATTCGTGTCATCAATACACAAGCTTCTTG TGAAGCACCATATGCGGGTACTTGTTTAGTTTGGACAAAATCTGCTTAGCCCCCTGAAGTATCA GGGTTTGTCTACTTAACCCCATGAACCTTGAAAAACAGTTCAAATAAATCACTAGAGTAGTTTT TAATTGGTTTTGCTATGTAGATGATAACGTGGCAGCTGGTTATTGCTTGCATGGCCGACATGTT AGCCCATTTTACGTAAACCAACCCAACCACTCCCTTTCCCTGATAGGTGAACCCGGGAACTACT CATTAGTTGTGATGTGCTTCAATGCCAGGCTGTCTTGTTGAAATACATTTAACCAAATCCATTG CCATCTCACTGTCCTCATCATTATTCATGCGACCAAAAGTCCAAAACCACTCTAGGGAATTATT TGAACTGATTTTTGTACTTCAGGGTTTAAGTAGACTAACCCCAAACTTTAGGCGGTTAAATAGA CTTTTTTACTTTTAGTATTTTGCACATAGCATTTTGAATGGCTTGGTCTAATTTCTAATTACTG CTATCTTTTACAGTATAGAAAATGGGATGAGATTGAAAATCGATTACTAAGGCGAGAGCCACTC ATCTCTGAGAACTTATCAGTACAAAAGTACACACAATGCCCGCCTGAAGTCATTAGTGACCCTC TTGATGATTTTGGTGGTGTTCCTTCTGAGGAGGCTGATGAAACACAGCGGCAACCAAGAAGTCA TCAAGTAAGATGCTTTGTTGTTTGGAAAACATTGGGACATTGGGACACTATGGATTCTCTGTGC CATTGTGCAATTTACTAAAGTTCTTTTTTTGTTAAGTGTAGTAGTGTGTTACGATTTTTTTTTT TTGGTAAAATTGCTTTCGGACATTTGGCATTTGGCAAAAAGCATGATGTTTTTGCATTCTGAAA ATATGAAAAAACTGTGAGACATGACAATCGGATGACATTTTATTTAACCTTAATTTTATTTGCA AAAAAAACCTATAAGAATCCTTGTTTGCATAGCAACTTAAAAAGATAAGCATAGTGCAGCATAG CACAACCACCACAAACCGAGCCTAATTGTTATTCACTGTTCAGCTTGGTTTTAGGGCTCCAGGC TCGTCTTAGTTCATAAAACCTTCTGACTTTGTTGAAGTCTTCAACTATGCTTTACCTGTGAAGA TCTTTGATCTTTTTGGGAATTTCAATCTTACCCAGCTGCTCTGCATAGCTTATTAGTTCTGAAC CTGCAGTAAGTGTATTTGTTTAGCTGAGCTGCTCCCTGTATCAGTTAATTATGTTTTGAAAAAT GAACATCCAAGAAGTAGCGGGTGAGTTATTGTGAAGTGTACTGTTGGTCGTTTTGCCTAGTTTG CATCATATTCGATAACTGTTACTCTTAAGTTCCTGTGCGCCCCTTGTCCACACCTAAAATAAAC TACATATTTAATAGGAGGGGATATCCTCTAATATTTTCTTTCATGTATTAATACCCTGCATTTT CATTTACTTGTAATATTAAAAGTTGGTTTGTTCTTTTTTAACATTAAGGATTTTGACTTCTACA GGTCAATGATGTTCGACTGAGAAGTGCCGGTGAGGCTTCTCAAAGGAGCACTAGAGAAGATTGG GCTGAATGGATGAGGCACTTCAGTATTGCGCTTCTCAAAGAATCACCATCTCCTGCTTTACGCA CTTGCGCAAGACTAGCACAACTTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_027118* 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_027118*
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							9887723-9890189(+)
9890109-9887684(+)
						
						Potential amino acid sequence
						
							MYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRLFKVELVDIRR
RAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGEDFTIFVSSIH
KLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEEADETQR
QPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQVLHLVEQ
LCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRL
FKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGE
DFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGV
PSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLA
QLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHM
HLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEA
LCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVI
SDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPS
PALRTCARLAQLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLE
VFGGNLDEHMHLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNN
DDLRKDAAEALCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQ
KYTQCPPEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHF
SIALLKESPSPALRTCARLAQLQ(+)
MDEALQYCASQRITISCFTHLRKTSTTSGSSPC*(+)
						
						Sponge-miRNAs
						
							osa-miR2868 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	9887723-9890189(+) 9890109-9887684(+)
Potential amino acid sequence	MYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRLFKVELVDIRR RAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGEDFTIFVSSIH KLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEEADETQR QPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQVLHLVEQ LCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRL FKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGE DFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGV PSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLA QLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHM HLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEA LCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVI SDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPS PALRTCARLAQLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLE VFGGNLDEHMHLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNN DDLRKDAAEALCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQ KYTQCPPEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHF SIALLKESPSPALRTCARLAQLQ(+) MDEALQYCASQRITISCFTHLRKTSTTSGSSPC*(+)
Sponge-miRNAs	osa-miR2868
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA019441_circ_g.12

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