Detail information of Os05g0235300_circ_g.3


General Information
CircRNA Name Os05g0235300_circ_g.3
ID in PlantcircBase osa_circ_027118
Alias Os_ciR4895
Organism Oryza sativa
Position chr5: 8276675-8279196  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os05g0235300
Parent gene annotation Serine/threonine (Ser/Thr) protein kinase, Modulation of thylako
id membrane lipid biosynthesis, homeostasis (Os05t0235300-01)
Parent gene strand +
Alternative splicing Os05g0235300_circ_g.1 Os05g0235300_circ_g.2
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0235300-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGATTGGGCTGAATGGATGAGGCACTTCAGTATTGCGCTTCTCAAAGAATCACCATCTCCT
GCTTTACGCACTTGCGCAAGACTAGCACAACTTCAGgttcttcaccttgttgaacaactatgct
tggcactgaatgacgaattcagaatgtatatacttcacatattgccaagttgtattcaagtcct
gggtgatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 798
Transcript exons: 8276675-8276837,8276922-8277043,8277152-8277204,8277400-
8277523,8278032-8278214,8279044-8279196
GTTCTTCACCTTGTTGAACAACTATGCTTGGCACTGAATGACGAATTCAGAATGTATATACTTC
ACATATTGCCAAGTTGTATTCAAGTCCTGGGTGATGCTGAACGCTGCAATGACTATTACTATGT
TCCTGACATATTGCACACCCTAGAGGTGTTTGGAGGAAATTTGGATGAGCACATGCACTTGGTT
GCTCCAGTACTTGTTCGGTTATTTAAAGTGGAGCTAGTTGATATCAGACGCCGTGCCATTGTCA
CTTTGACTAAACTCATACCTACGGTGCAGGTTGGTACTCATGTTTCGGTTTTGGTGCATCATCT
AAAGCTAGTTTTGGATGGAAACAATGATGATCTACGGAAAGATGCAGCAGAGGCGCTTTGTTGT
CTTGCACATGCTCTTGGAGAAGATTTTACAATATTCGTGTCATCAATACACAAGCTTCTTGTGA
AGCACCATATGCGGTATAGAAAATGGGATGAGATTGAAAATCGATTACTAAGGCGAGAGCCACT
CATCTCTGAGAACTTATCAGTACAAAAGTACACACAATGCCCGCCTGAAGTCATTAGTGACCCT
CTTGATGATTTTGGTGGTGTTCCTTCTGAGGAGGCTGATGAAACACAGCGGCAACCAAGAAGTC
ATCAAGTCAATGATGTTCGACTGAGAAGTGCCGGTGAGGCTTCTCAAAGGAGCACTAGAGAAGA
TTGGGCTGAATGGATGAGGCACTTCAGTATTGCGCTTCTCAAAGAATCACCATCTCCTGCTTTA
CGCACTTGCGCAAGACTAGCACAACTTCAG

Genomic sequence GTTCTTCACCTTGTTGAACAACTATGCTTGGCACTGAATGACGAATTCAGAATGTATATACTTC
ACATATTGCCAAGTTGTATTCAAGTCCTGGGTGATGCTGAACGCTGCAATGACTATTACTATGT
TCCTGACATATTGCACACCCTAGAGGTGTTTGGAGGTCCGTCTCCAGTTCTGTTTCTTCTTATG
TCCACAACAAATCATTGGTCAGTTTTAACTTGTTATGATGAATTTCTCCTTTTAGGAAATTTGG
ATGAGCACATGCACTTGGTTGCTCCAGTACTTGTTCGGTTATTTAAAGTGGAGCTAGTTGATAT
CAGACGCCGTGCCATTGTCACTTTGACTAAACTCATACCTACGGTGCAGGTCGGTTATTGTTCA
ATTTTAGTTTGACTATTATAGTTTTTACCTAATACACAGAAACTTCTGTGCCTTTCTTCTGTAC
ATCATGTGTTCTCAACATATCTTGTCCAGGTTGGTACTCATGTTTCGGTTTTGGTGCATCATCT
AAAGCTAGTTTTGGATGGGTAAGACTTCTGGTGACAAGTAACATTCTATTTCTTGTGTATTATG
GTTGTATCAAGAAAACATTGAGGGATTATGAACCACTATTTCTTGTTTTCAGACCATGTTTATG
AGTATAATGCTTATCATCTGTTTGTCAACTTTTGTACTTTTTAGTTGTGCATCACCAGATTGTT
AATTTGTCTTTCTGTGGCTAGAAACAATGATGATCTACGGAAAGATGCAGCAGAGGCGCTTTGT
TGTCTTGCACATGCTCTTGGAGAAGATTTTACAATATTCGTGTCATCAATACACAAGCTTCTTG
TGAAGCACCATATGCGGGTACTTGTTTAGTTTGGACAAAATCTGCTTAGCCCCCTGAAGTATCA
GGGTTTGTCTACTTAACCCCATGAACCTTGAAAAACAGTTCAAATAAATCACTAGAGTAGTTTT
TAATTGGTTTTGCTATGTAGATGATAACGTGGCAGCTGGTTATTGCTTGCATGGCCGACATGTT
AGCCCATTTTACGTAAACCAACCCAACCACTCCCTTTCCCTGATAGGTGAACCCGGGAACTACT
CATTAGTTGTGATGTGCTTCAATGCCAGGCTGTCTTGTTGAAATACATTTAACCAAATCCATTG
CCATCTCACTGTCCTCATCATTATTCATGCGACCAAAAGTCCAAAACCACTCTAGGGAATTATT
TGAACTGATTTTTGTACTTCAGGGTTTAAGTAGACTAACCCCAAACTTTAGGCGGTTAAATAGA
CTTTTTTACTTTTAGTATTTTGCACATAGCATTTTGAATGGCTTGGTCTAATTTCTAATTACTG
CTATCTTTTACAGTATAGAAAATGGGATGAGATTGAAAATCGATTACTAAGGCGAGAGCCACTC
ATCTCTGAGAACTTATCAGTACAAAAGTACACACAATGCCCGCCTGAAGTCATTAGTGACCCTC
TTGATGATTTTGGTGGTGTTCCTTCTGAGGAGGCTGATGAAACACAGCGGCAACCAAGAAGTCA
TCAAGTAAGATGCTTTGTTGTTTGGAAAACATTGGGACATTGGGACACTATGGATTCTCTGTGC
CATTGTGCAATTTACTAAAGTTCTTTTTTTGTTAAGTGTAGTAGTGTGTTACGATTTTTTTTTT
TTGGTAAAATTGCTTTCGGACATTTGGCATTTGGCAAAAAGCATGATGTTTTTGCATTCTGAAA
ATATGAAAAAACTGTGAGACATGACAATCGGATGACATTTTATTTAACCTTAATTTTATTTGCA
AAAAAAACCTATAAGAATCCTTGTTTGCATAGCAACTTAAAAAGATAAGCATAGTGCAGCATAG
CACAACCACCACAAACCGAGCCTAATTGTTATTCACTGTTCAGCTTGGTTTTAGGGCTCCAGGC
TCGTCTTAGTTCATAAAACCTTCTGACTTTGTTGAAGTCTTCAACTATGCTTTACCTGTGAAGA
TCTTTGATCTTTTTGGGAATTTCAATCTTACCCAGCTGCTCTGCATAGCTTATTAGTTCTGAAC
CTGCAGTAAGTGTATTTGTTTAGCTGAGCTGCTCCCTGTATCAGTTAATTATGTTTTGAAAAAT
GAACATCCAAGAAGTAGCGGGTGAGTTATTGTGAAGTGTACTGTTGGTCGTTTTGCCTAGTTTG
CATCATATTCGATAACTGTTACTCTTAAGTTCCTGTGCGCCCCTTGTCCACACCTAAAATAAAC
TACATATTTAATAGGAGGGGATATCCTCTAATATTTTCTTTCATGTATTAATACCCTGCATTTT
CATTTACTTGTAATATTAAAAGTTGGTTTGTTCTTTTTTAACATTAAGGATTTTGACTTCTACA
GGTCAATGATGTTCGACTGAGAAGTGCCGGTGAGGCTTCTCAAAGGAGCACTAGAGAAGATTGG
GCTGAATGGATGAGGCACTTCAGTATTGCGCTTCTCAAAGAATCACCATCTCCTGCTTTACGCA
CTTGCGCAAGACTAGCACAACTTCAG
Conservation Information
Conserved circRNAs osi_circ_006081* osi_circ_016065
PMCS 0.234498255
Functional Information
Coding potential Y
Potential coding position 8276727-8279193(+)
8279113-8276688(+)
Potential amino acid sequence MYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRLFKVELVDIRR
RAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGEDFTIFVSSIH
KLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEEADETQR
QPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQVLHLVEQ
LCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRL
FKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGE
DFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGV
PSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLA
QLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHM
HLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEA
LCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVI
SDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPS
PALRTCARLAQLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLE
VFGGNLDEHMHLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNN
DDLRKDAAEALCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQ
KYTQCPPEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHF
SIALLKESPSPALRTCARLAQLQ(+)
MDEALQYCASQRITISCFTHLRKTSTTSGSSPC*(+)
Sponge-miRNAs osa-miR2868
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015