Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os05g0235300_circ_g.3 |
| ID in PlantcircBase | osa_circ_027118 |
| Alias | Os_ciR4895 |
| Organism | Oryza sativa |
| Position | chr5: 8276675-8279196 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Os05g0235300 |
| Parent gene annotation |
Serine/threonine (Ser/Thr) protein kinase, Modulation of thylako id membrane lipid biosynthesis, homeostasis (Os05t0235300-01) |
| Parent gene strand | + |
| Alternative splicing | Os05g0235300_circ_g.1 Os05g0235300_circ_g.2 |
| Support reads | 4 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os05t0235300-01:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_006081* osi_circ_016065 |
| PMCS | 0.234498255 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
8276727-8279193(+) 8279113-8276688(+) |
| Potential amino acid sequence |
MYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRLFKVELVDIRR RAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGEDFTIFVSSIH KLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEEADETQR QPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQVLHLVEQ LCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRL FKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGE DFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGV PSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLA QLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLEVFGGNLDEHM HLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEA LCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVI SDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPS PALRTCARLAQLQVLHLVEQLCLALNDEFRMYILHILPSCIQVLGDAERCNDYYYVPDILHTLE VFGGNLDEHMHLVAPVLVRLFKVELVDIRRRAIVTLTKLIPTVQVGTHVSVLVHHLKLVLDGNN DDLRKDAAEALCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENLSVQ KYTQCPPEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHF SIALLKESPSPALRTCARLAQLQ(+) MDEALQYCASQRITISCFTHLRKTSTTSGSSPC*(+) |
| Sponge-miRNAs | osa-miR2868 |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015 |