Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA019441_circ_g.14 |
ID in PlantcircBase | osi_circ_006083 |
Alias | 5:9889028|9894733 |
Organism | Oryza sativa ssp. indica |
Position | chr5: 9889028-9894733 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA019441 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA019441_circ_g.8 BGIOSGA019441_circ_g.9 BGIOSGA019441_circ_g.10 BGIOSGA019441_circ_g.11 BGIOSGA019441_circ_g.12 BGIOSGA019441_circ_g.13 BGIOSGA019441_circ_g.15 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA019441-TA:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9889133-9891419(-) 9890113-9894730(+) 9894416-9889061(+) |
Potential amino acid sequence |
MTSGGHCVYFCTDKFSEMSGSRLSNRFSISSHFLYNAASSVAKHRRALSTYTRASSYFLQRTER TALKKAPLLLPSPLAVVLPNIRSLFSSPSSRRETYSAMWSHSPICQAALAAIGAISSRADGSEP VHCSLHNALKSSQRAKAARHLIRPNVASKFCNGPDA*(-) MRHFSIALLKESPSPALRTCARLAQLQPSVGRELFAAGFASCWAQMNETSQEQLVRSLKTAFSS QNIPPEILATLLNLAEFMEHDEKPLPIDTRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGAN PVTVVESLIHINNQLHQHEAAIGILTYSQQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGP LQNLDATLGRMRCLAALARWEDLSALCREQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVS RLDDGDENKLRILGNTTASGDGSSNGAFFRAVLSVRCKKYEEARVYVERARRCLATELAALYRK WDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRL RSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQPSVGRELFAAGFASCWAQM NETSQEQLVRSLKTAFSSQNIPPEILATLLNLAEFMEHDEKPLPIDTRLLGALAEKCRAFAKAL HYKEMEFEAVCSKKMGANPVTVVESLIHINNQLHQHEAAIGILTYSQQHLEVQLKESWYEKLHR WDEALKAYKAKSSQASGPLQNLDATLGRMRCLAALARWEDLSALCREQWTGSEPSARLEMAPMA ANAAWHMGEWDHMAEYVSRLDDGDENKLRILGNTTASGDGSSNGAFFRAVLSVRCKKYEEARVY VERARRCLATELAALYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEE ADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQP SVGRELFAAGFASCWAQMNETSQEQLVRSLKTAFSSQNIPPEILATLLNLAEFMEHDEKPLPID TRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGANPVTVVESLIHINNQLHQHEAAIGILTYS QQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGPLQNLDATLGRMRCLAALARWEDLSALCR EQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVSRLDDGDENKLRILGNTTASGDGSSNGAF FRAVLSVRCKKYEEARVYVERARRCLATELAALYRKWDEIENRLLRREPLISENLSVQKYTQCP PEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLK ESPSPALRTCARLAQLQPSVGRELFAAGFASCWAQMNETSQEQLVRSLKTAFSSQNIPPEILAT LLNLAEFMEHDEKPLPIDTRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGANPVTVVESLIH INNQLHQHEAAIGILTYSQQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGPLQNLDATLGR MRCLAALARWEDLSALCREQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVSRLDDGDENKL RILGNTTASGDGSSNGAFFRAVLSVRCKKYEEARVYVERARRCLATELAAL(+) MLLGIWVSGTTWLNMFLVWMMGMKTSSGYWVTQQLVVTEAAMVLSLGLFFQFVAKSMKKLVYML RELGGVWLQNLQHCIENGMRLKIDY*(+) |
Sponge-miRNAs | osa-miR414 osa-miR2864.2 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |