Detail information of BGIOSGA019441_circ_g.14


General Information
CircRNA Name BGIOSGA019441_circ_g.14
ID in PlantcircBase osi_circ_006083
Alias 5:9889028|9894733
Organism Oryza sativa ssp. indica
Position chr5: 9889028-9894733  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA019441
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019441_circ_g.8 BGIOSGA019441_circ_g.9 BGIOSGA019441_circ_g.10 BGIOSGA019441_circ_g.11 BGIOSGA019441_circ_g.12 BGIOSGA019441_circ_g.13 BGIOSGA019441_circ_g.15
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA019441-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATGCTTTTGGTTACTTGGCATTTGTTTTGCAGTATGAAGAAGCTCGTGTATATGTTGAGAGA
GCTCGGCGGTGTTTGGCTACAGAACTTGCAGCATTGtatagaaaatgggatgagattgaaaatc
gattactaaggcgagagccactcatctctgagaacttatcagtacaaaagtacacacaatgccc
gcctgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 9889133-9891419(-)
9890113-9894730(+)
9894416-9889061(+)
Potential amino acid sequence MTSGGHCVYFCTDKFSEMSGSRLSNRFSISSHFLYNAASSVAKHRRALSTYTRASSYFLQRTER
TALKKAPLLLPSPLAVVLPNIRSLFSSPSSRRETYSAMWSHSPICQAALAAIGAISSRADGSEP
VHCSLHNALKSSQRAKAARHLIRPNVASKFCNGPDA*(-)
MRHFSIALLKESPSPALRTCARLAQLQPSVGRELFAAGFASCWAQMNETSQEQLVRSLKTAFSS
QNIPPEILATLLNLAEFMEHDEKPLPIDTRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGAN
PVTVVESLIHINNQLHQHEAAIGILTYSQQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGP
LQNLDATLGRMRCLAALARWEDLSALCREQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVS
RLDDGDENKLRILGNTTASGDGSSNGAFFRAVLSVRCKKYEEARVYVERARRCLATELAALYRK
WDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRL
RSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQPSVGRELFAAGFASCWAQM
NETSQEQLVRSLKTAFSSQNIPPEILATLLNLAEFMEHDEKPLPIDTRLLGALAEKCRAFAKAL
HYKEMEFEAVCSKKMGANPVTVVESLIHINNQLHQHEAAIGILTYSQQHLEVQLKESWYEKLHR
WDEALKAYKAKSSQASGPLQNLDATLGRMRCLAALARWEDLSALCREQWTGSEPSARLEMAPMA
ANAAWHMGEWDHMAEYVSRLDDGDENKLRILGNTTASGDGSSNGAFFRAVLSVRCKKYEEARVY
VERARRCLATELAALYRKWDEIENRLLRREPLISENLSVQKYTQCPPEVISDPLDDFGGVPSEE
ADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQP
SVGRELFAAGFASCWAQMNETSQEQLVRSLKTAFSSQNIPPEILATLLNLAEFMEHDEKPLPID
TRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGANPVTVVESLIHINNQLHQHEAAIGILTYS
QQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGPLQNLDATLGRMRCLAALARWEDLSALCR
EQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVSRLDDGDENKLRILGNTTASGDGSSNGAF
FRAVLSVRCKKYEEARVYVERARRCLATELAALYRKWDEIENRLLRREPLISENLSVQKYTQCP
PEVISDPLDDFGGVPSEEADETQRQPRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLK
ESPSPALRTCARLAQLQPSVGRELFAAGFASCWAQMNETSQEQLVRSLKTAFSSQNIPPEILAT
LLNLAEFMEHDEKPLPIDTRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGANPVTVVESLIH
INNQLHQHEAAIGILTYSQQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGPLQNLDATLGR
MRCLAALARWEDLSALCREQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVSRLDDGDENKL
RILGNTTASGDGSSNGAFFRAVLSVRCKKYEEARVYVERARRCLATELAAL(+)
MLLGIWVSGTTWLNMFLVWMMGMKTSSGYWVTQQLVVTEAAMVLSLGLFFQFVAKSMKKLVYML
RELGGVWLQNLQHCIENGMRLKIDY*(+)
Sponge-miRNAs osa-miR414 osa-miR2864.2
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021