Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d039165_circ_g.3 |
ID in PlantcircBase | zma_circ_009196 |
Alias | Zm06circ00107, zma_circ_0002333 |
Organism | Zea mays |
Position | chr6: 171565134-171570929 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d039165 |
Parent gene annotation |
DNA damage-binding protein 1a |
Parent gene strand | - |
Alternative splicing | Zm00001d039165_circ_g.1 Zm00001d039165_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d039165_T011:10 Zm00001d039165_T021:10 Zm00001d039165_T018:9 Zm00001d039165_T022:10 Zm00001d039165_T004:9 Zm00001d039165_T012:10 Zm00001d039165_T020:10 Zm00001d039165_T014:10 Zm00001d039165_T005:10 Zm00001d039165_T007:10 Zm00001d039165_T019:10 Zm00001d039165_T013:10 Zm00001d039165_T006:9 Zm00001d039165_T002:10 Zm00001d039165_T010:9 Zm00001d039165_T003:10 Zm00001d039165_T001:10 Zm00001d039165_T016:8 Zm00001d039165_T008:10 Zm00001d039165_T009:10 Zm00001d039165_T015:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.098316527 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
171570866-171565173(+) 171569485-171565136(-) 171565172-171570882(-) |
Potential amino acid sequence |
MISSSSRSSSNVKFSLSRIVSTFKRCFPRGGHKHP*(+) MDLLFSFIKPDHPHSTLLAGYFSKVVICLMLRKTAPLMNYVQEHPDIVVQLVDLIGITSIMEVL VRLIGADETIYLNFADTLHWLENTYVLEMIVDKFSSSDSPEVHANAAEILSAVTRCAPPALAAK ICSPSFVGRLFHHALDESRPKSVLVHSLSVCISLLDPKRLASVSYQAFRSNLTHGTLVTASPET VDGILESLGDLLKLLDITSSQNVFPTTYGCLCPPLGKHRLKVDTILDKENFTLEELLDEDEIIQ ECKALNTRLINFLRDKAQVSQLLRYIVEEVPEDSEKKQSFKFPFIACEIFACEIDIILRTLVED VELMDLLFSFIKPDHPHSTLLAGYFSKVVICLMLRKTAPLMNYVQEHPDIVVQLVDLIGITSIM EVLVRLIGADETIYLNFADTLHWLENTYVLEMIVDKFSSSDSPEVHANAAEILSAVTRCAPPAL AAKICSPSFVGRLFHHALDESRPKSVLVHSLSVCISLLDPKRLASVSYQAFRSNLTHGTLVTAS PETVDGILESLGDLLKLLDITSSQNVFPTTYGCLCPPLGKHRLKVDTILDKENFTLEELLDEDE IIQECKALNTRLINFLRDKAQVSQLLRYIVEEVPEDSEKKQSFKFPFIACEIFACEIDIILRTL VEDVELMDLLFSFIKPDHPHSTLLAGYFSKVVICLMLRKTAPLMNYVQEHPDIVVQLVDLIGIT SIMEVLVRLIGADETIYLNFADTLHWLENTYVLEMIVDKFSSSDSPEVHANAAEILSAVTRCAP PALAAKICSPSFVGRLFHHALDESRPKSVLVHSLSVCISLLDPKRLASVSYQAFRSNLTHGTLV TASPETVDGILESLGDLLKLLDITSSQNVFPTTYGCLCPPLGKHRLKVDTILDKENFTLEELLD EDEIIQECKALNTRLINFLRDKAQVSQLLRYIVEEVPEDSEKKQSFKFPFIACEIFACEIDIIL RTLVEDVELMDLLFSFIKPDHPHSTLLAGYFSKVVICLMLRKTAPLMNYVQEHPDIVVQLVDLI GITSIMEVLVRLIGADETIYLNFADTLHWLENTYVLEMIVDKFSSSDSPEVHANAAEILSAVTR CAPPALAAKICSPSFVGRLFHHALDESRPKSVLVHSLSVCISLLDPKRLASVSYQAFRSNLTHG TLVTASPETVDGILESLGDLLKLLDITSSQNVFPTTYGCLCPPLGKHRLK(-) MFVSASWKTPFEGGYNSGQGELYIGRAS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |