Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d039165_circ_g.2 |
ID in PlantcircBase | zma_circ_009195 |
Alias | zma_circ_0002443, ZmciR273 |
Organism | Zea mays |
Position | chr6: 171565134-171565640 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d039165 |
Parent gene annotation |
DNA damage-binding protein 1a |
Parent gene strand | - |
Alternative splicing | Zm00001d039165_circ_g.1 Zm00001d039165_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d039165_T011:2 Zm00001d039165_T022:2 Zm00001d039165_T002:2 Zm00001d039165_T014:2 Zm00001d039165_T020:2 Zm00001d039165_T019:2 Zm00001d039165_T001:2 Zm00001d039165_T009:2 Zm00001d039165_T003:2 Zm00001d039165_T016:2 Zm00001d039165_T012:2 Zm00001d039165_T005:2 Zm00001d039165_T018:2 Zm00001d039165_T007:2 Zm00001d039165_T006:2 Zm00001d039165_T008:2 Zm00001d039165_T013:2 Zm00001d039165_T015:2 Zm00001d039165_T010:2 Zm00001d039165_T021:2 Zm00001d039165_T004:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.238084468 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
171565617-171565180(+) 171565514-171565173(+) 171565172-171565536(-) |
Potential amino acid sequence |
MMKQPANKTSNGVFQEADTNIHKL*(+) MLGMRLMLVFWGPIKIYTLTMNEPEQILVLTRQEHDETTCQQNFKRCFPRGGHKHP*(+) MFVSASWKTPFEVLLAGCFIMLLTSQDQNLFWFIHCQCVYLYWTPKD*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |